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The map label for this gene is 169628219

Identifier: 169628219

GI number: 169628219

Start: 1136882

End: 1137787

Strand: Reverse

Name: 169628219

Synonym: MAB_1126c

Alternate gene names: NA

Gene position: 1137787-1136882 (Counterclockwise)

Preceding gene: 169628220

Following gene: 169628218

Centisome position: 22.45

GC content: 64.46

Gene sequence:

>906_bases
GTGTCCGGCACCGATCATGCCGAGCTGTTCACCCACCTGCGCCCGCTGCTGTTCACCATCGCATACGAAATGCTCGGTTC
CGCAACGGAAGCCGATGATGTACTGCAGGAGAGCTATCTGCGGTGGGCGCAGGTGGACCTGGACACCGTGACCGACACCA
AGGCCTATTTGGCACAAATTGTCAGCCGCCAGGCCCTGAATACCCTGCGCACCAACAGCCGTCGTCGCGAGGAGTATGTG
GGGCCGTGGCTGCCCGAGCCAGTACGGGTGGCCTACGACGACAGCGACAAGGACGCCTCGACCGATGTGGTGCTGGCCGA
ATCGGTCTCCATGGCCATGCTCGTCGTGTTGGAAACCCTGGCCCCGGACGAGCGTGCCGTGTTCGTGATGCGCGAAGTGT
TCGGCTTCGACTACTCCGAAATCGCCTCGACGGTAGGCAAATCCGAGGTTGCGGTGCGCCAGATGGCGCACCGTGCCCGC
GCGCATGTGCAATCACGGCGACGCCGATTCACGCCCACCGATCGGCAGGCCGAGGAGCTGACCACCAAGTTTCTGCTCGC
CGCCGCCGGTGGCGATGTCGACGCGCTGGTCGAGATGCTCGCCCCGGACGCTGTCTGGACGTCCGACGGCGGCGGCAAGG
TCAGTGCGGCGCGACGGCCCGTATACGGCGCCGACAGGGTGGCCCGCGTGGCGATCGGGCTATCGCGTGCCGCCGCGGAG
TTCCCCGATGTGCGGATGGAATTCAGCACGTTCAACAGCACGCCGGCACTGCTGATCTACACCGAAGGGCGCCTAGACGT
GGTGCTCGCCGTCTCGATCGAGGATGGCAAGGTGGAACACATCTTCGCCATCCGCAACCCCGACAAATTGGCCACCGCCG
AAATCACACGCCATATCAGCAGATAA

Upstream 100 bases:

>100_bases
GAACACTTTCCATCCTGGCAACCGCGGCCAAACACCCCACCTGGTACTACTGGCCGCAGGGCGGCAAGCGTGCCGAGGCA
CTCAGAGCACAGGTGTAGCG

Downstream 100 bases:

>100_bases
CCGGTGGCGGCCCCGGCGGGTCATCGGACACAATCACCGGCGTGTTCTGTGATATCGACACGGCCGCGCGCATCGAACGC
GCCGAGGCCGACACCATTGC

Product: putative sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70-Like Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSGTDHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQIVSRQALNTLRTNSRRREEYV
GPWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETLAPDERAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRAR
AHVQSRRRRFTPTDRQAEELTTKFLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAE
FPDVRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHISR

Sequences:

>Translated_301_residues
MSGTDHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQIVSRQALNTLRTNSRRREEYV
GPWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETLAPDERAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRAR
AHVQSRRRRFTPTDRQAEELTTKFLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAE
FPDVRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHISR
>Mature_300_residues
SGTDHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQIVSRQALNTLRTNSRRREEYVG
PWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETLAPDERAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRARA
HVQSRRRRFTPTDRQAEELTTKFLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAEF
PDVRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHISR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33350; Mature: 33219

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTDHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQI
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VSRQALNTLRTNSRRREEYVGPWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETL
HHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHH
APDERAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRARAHVQSRRRRFTPTDRQAEEL
CCCHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
TTKFLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAE
HHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCEEHHCCCCCCCHHHHHHHHHHHHHHHHC
FPDVRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHIS
CCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
SGTDHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQI
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VSRQALNTLRTNSRRREEYVGPWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETL
HHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHH
APDERAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRARAHVQSRRRRFTPTDRQAEEL
CCCHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
TTKFLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAE
HHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCEEHHCCCCCCCHHHHHHHHHHHHHHHHC
FPDVRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHIS
CCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA