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The map label for this gene is yddA [C]

Identifier: 169628160

GI number: 169628160

Start: 1075542

End: 1077407

Strand: Direct

Name: yddA [C]

Synonym: MAB_1065

Alternate gene names: 169628160

Gene position: 1075542-1077407 (Clockwise)

Preceding gene: 169628159

Following gene: 169628161

Centisome position: 21.23

GC content: 63.08

Gene sequence:

>1866_bases
ATGGTTCAGCCCAGTTTGGATTGGCCGGGCGAGCCACTGCGCTCGCTGGTGTGGACCCTGCAGGCCTGGGCCGTCACCAT
GCTGGTGTTTCTCGCGGTGGCTGTCATCGTCGCCCGTTTTACCCAGTGGGGACAACAGTTCTGGCGGGTGAACGCGCCTT
TCTTCTGGGGGCGTGGCACCTGGCGCACGTGGGCGCTGTTGGCGTTCGTCATGTGGCACACCGTGTATATGGCGCGCGTC
GCGGTCATCTTCACGTACCAGTACAAGGACCTGATGAATGCGTTACAAGTCGGGTCCGAGGCGCTCGTCACGCACGATTC
CGCGCTGCTGACCGACGCGCGACAGGCGTTCTTCACGTCGTTCGCGATCAGCGGCGTCTTGGTCGTCCTGACGGTGACGT
ATACGGTGGTGGACCTTTTTCTGCGAAGGGTCTTCGCCATCAGGTGGCGGGTCTGGCTCAACACGCGGCTGGTTGATGAC
TGGATGAGCAAGGATGCCTTCTACCGCAACCGTTTTCTGGATCCGCCGGTTGAGAACCCGGATCAGCGGATCCAGAACGA
CATCGAAACGCACACCACCAAGTCGGTGGATCTAGTGCTCGGCGCCGTGAACAAGACCCTGCTGATTGTCATGTTCACCG
GGGTGTTGTGGCAGCTCTCGGGTCCGCTGCTGTTGTGGGGATTCGAGATTCCGCGAGCCATGGTGTTCATCGCCTTCGTG
TTCTCGATCACTGTCACCGTGCTGGCGTTCTGGATCGGTCGGCCGCTGGTGCGTCTGAATTTCCTAAACGAGCGATACGG
CGCGAGCTTTCGATACGCGCTGGTCCGTCTGCGAGACAGCGCCGAACGAGTCGCGTTCTACCGCGGCGGGGAACGTGAAC
GGCGACTGCTGCATTCGCGGTTCAACGAAATCATCGCCAACATGTGGCGCATCGTGTTCGCGCAGTTGAGACTCAACGGC
TGGAACCGGGGCGTCGGGGACGTGACGACGGGCATGATCCCGTACATCGTGCAGGCACCGCGCTTCTTCGCCGGCCAGAT
CAAGGTCGGCGATCTGCTGCAGACCGTCGCCGCGTTCGGGAATGTCTGCGGTGCCATGTCGTTCTTTCGGGACAGCTATG
ACGAATTCACCGTCTATCGGGCCGCCTTGCTGCGTATCGATCAGATGCTCGACAGTGACCACCGGGCTCGCGAGTTGCCC
CGCATCGCCGTGACCGACGCCGACGCGGTCCTGACGCTCACCGACGTGGCGGTGCGGAACCTGCAAGGACAGGACATGAT
CACCGATCTGAATCTCGCGCTGACCCCGGGCGGCAGTGTCGTGGTGAAGGGGCCGTCGGGATGCGGCAAAACCACCCTGT
TGCGCAGCCTGGCACAGTTGTGGCCACAGACCTCGGGCTTGGTGGCGCGTCCAGATGGATGGGCGACGTTGTTCCTGCCG
CAGCTACCGTATTTGCCGCTGGGCAATCTCCGCGAGACCATCGTGTATCCGCTTCCCGTGGAAGAAGTTTCGGATGAGGA
GCTGAAGCAGGCCCTGCGCGATGTCTCCCTCGGGCATCTCACCGAACGGCTGGACCAGGAGGCCGACTGGGCGGCTGTGC
TCTCGCTGGGGGAGCAGCAGCGGGTCTCCTTCGTGCGGGTGCTGCTGGTGCGGCCCACAGTGGTGTTCTTGGATGAGTCC
ACCTCGGCCCTGGACGAAGGGCTGGAGGATGCGATGTACGCGTTGGTGCGCGAGCGGCTGCCCGCCTGCGCGGTGGTCAG
TGTGGGGCACAGGTCGACGATTGACCGCCATCATCAGTCGCGGTTGGTGCTGACCGGAACCGGGGCATGGGAACTGTCCG
CGACCGGAGCGTCGCCGTCTCGCTGA

Upstream 100 bases:

>100_bases
GATGAGTTGGTAACCGACGCCGCCAAGGCGGCGGGTATCACCCTCTACACCACCGGAGCACGCCACTTCGCCCACTAAGG
CGCATCACGAGGGAGAGCCG

Downstream 100 bases:

>100_bases
TCGTTTGCGGAATGGAGCATCTCGGATGCTCGAAGATCATTGTCCCGGATTCCGCGCTGCTGGCAGAGGTAACATTGGGA
AAGATTGCCCAGCTCCTGCG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MVQPSLDWPGEPLRSLVWTLQAWAVTMLVFLAVAVIVARFTQWGQQFWRVNAPFFWGRGTWRTWALLAFVMWHTVYMARV
AVIFTYQYKDLMNALQVGSEALVTHDSALLTDARQAFFTSFAISGVLVVLTVTYTVVDLFLRRVFAIRWRVWLNTRLVDD
WMSKDAFYRNRFLDPPVENPDQRIQNDIETHTTKSVDLVLGAVNKTLLIVMFTGVLWQLSGPLLLWGFEIPRAMVFIAFV
FSITVTVLAFWIGRPLVRLNFLNERYGASFRYALVRLRDSAERVAFYRGGERERRLLHSRFNEIIANMWRIVFAQLRLNG
WNRGVGDVTTGMIPYIVQAPRFFAGQIKVGDLLQTVAAFGNVCGAMSFFRDSYDEFTVYRAALLRIDQMLDSDHRARELP
RIAVTDADAVLTLTDVAVRNLQGQDMITDLNLALTPGGSVVVKGPSGCGKTTLLRSLAQLWPQTSGLVARPDGWATLFLP
QLPYLPLGNLRETIVYPLPVEEVSDEELKQALRDVSLGHLTERLDQEADWAAVLSLGEQQRVSFVRVLLVRPTVVFLDES
TSALDEGLEDAMYALVRERLPACAVVSVGHRSTIDRHHQSRLVLTGTGAWELSATGASPSR

Sequences:

>Translated_621_residues
MVQPSLDWPGEPLRSLVWTLQAWAVTMLVFLAVAVIVARFTQWGQQFWRVNAPFFWGRGTWRTWALLAFVMWHTVYMARV
AVIFTYQYKDLMNALQVGSEALVTHDSALLTDARQAFFTSFAISGVLVVLTVTYTVVDLFLRRVFAIRWRVWLNTRLVDD
WMSKDAFYRNRFLDPPVENPDQRIQNDIETHTTKSVDLVLGAVNKTLLIVMFTGVLWQLSGPLLLWGFEIPRAMVFIAFV
FSITVTVLAFWIGRPLVRLNFLNERYGASFRYALVRLRDSAERVAFYRGGERERRLLHSRFNEIIANMWRIVFAQLRLNG
WNRGVGDVTTGMIPYIVQAPRFFAGQIKVGDLLQTVAAFGNVCGAMSFFRDSYDEFTVYRAALLRIDQMLDSDHRARELP
RIAVTDADAVLTLTDVAVRNLQGQDMITDLNLALTPGGSVVVKGPSGCGKTTLLRSLAQLWPQTSGLVARPDGWATLFLP
QLPYLPLGNLRETIVYPLPVEEVSDEELKQALRDVSLGHLTERLDQEADWAAVLSLGEQQRVSFVRVLLVRPTVVFLDES
TSALDEGLEDAMYALVRERLPACAVVSVGHRSTIDRHHQSRLVLTGTGAWELSATGASPSR
>Mature_621_residues
MVQPSLDWPGEPLRSLVWTLQAWAVTMLVFLAVAVIVARFTQWGQQFWRVNAPFFWGRGTWRTWALLAFVMWHTVYMARV
AVIFTYQYKDLMNALQVGSEALVTHDSALLTDARQAFFTSFAISGVLVVLTVTYTVVDLFLRRVFAIRWRVWLNTRLVDD
WMSKDAFYRNRFLDPPVENPDQRIQNDIETHTTKSVDLVLGAVNKTLLIVMFTGVLWQLSGPLLLWGFEIPRAMVFIAFV
FSITVTVLAFWIGRPLVRLNFLNERYGASFRYALVRLRDSAERVAFYRGGERERRLLHSRFNEIIANMWRIVFAQLRLNG
WNRGVGDVTTGMIPYIVQAPRFFAGQIKVGDLLQTVAAFGNVCGAMSFFRDSYDEFTVYRAALLRIDQMLDSDHRARELP
RIAVTDADAVLTLTDVAVRNLQGQDMITDLNLALTPGGSVVVKGPSGCGKTTLLRSLAQLWPQTSGLVARPDGWATLFLP
QLPYLPLGNLRETIVYPLPVEEVSDEELKQALRDVSLGHLTERLDQEADWAAVLSLGEQQRVSFVRVLLVRPTVVFLDES
TSALDEGLEDAMYALVRERLPACAVVSVGHRSTIDRHHQSRLVLTGTGAWELSATGASPSR

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=507, Percent_Identity=26.6272189349112, Blast_Score=193, Evalue=4e-49,
Organism=Homo sapiens, GI4826958, Length=546, Percent_Identity=28.7545787545788, Blast_Score=172, Evalue=9e-43,
Organism=Homo sapiens, GI9945308, Length=536, Percent_Identity=25.7462686567164, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI7262393, Length=551, Percent_Identity=24.5009074410163, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI157502201, Length=208, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI156105685, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787772, Length=477, Percent_Identity=31.0272536687631, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787112, Length=232, Percent_Identity=28.448275862069, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=31.413612565445, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=169, Percent_Identity=33.1360946745562, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786563, Length=165, Percent_Identity=32.1212121212121, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1786575, Length=377, Percent_Identity=22.8116710875332, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=29.3269230769231, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=507, Percent_Identity=25.4437869822485, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17532411, Length=505, Percent_Identity=26.9306930693069, Blast_Score=182, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI72000518, Length=557, Percent_Identity=26.7504488330341, Blast_Score=170, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17564250, Length=538, Percent_Identity=26.5799256505576, Blast_Score=169, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI72000520, Length=509, Percent_Identity=26.7190569744597, Blast_Score=154, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17542146, Length=220, Percent_Identity=33.1818181818182, Blast_Score=137, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17558960, Length=196, Percent_Identity=40.8163265306122, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17565938, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17543740, Length=211, Percent_Identity=27.9620853080569, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17558664, Length=190, Percent_Identity=30.5263157894737, Blast_Score=77, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=240, Percent_Identity=27.0833333333333, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=206, Percent_Identity=27.1844660194175, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=172, Percent_Identity=30.2325581395349, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=209, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325110, Length=200, Percent_Identity=35, Blast_Score=127, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6324985, Length=204, Percent_Identity=27.4509803921569, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323217, Length=205, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24643394, Length=512, Percent_Identity=25.390625, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24638558, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI24638550, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24638552, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24638554, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24638546, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24638556, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24638548, Length=537, Percent_Identity=24.7672253258845, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI23397593, Length=198, Percent_Identity=30.8080808080808, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85726357, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=214, Percent_Identity=29.4392523364486, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70206; Mature: 70206

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure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EEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]