Click here to switch to the map view.

The map label for this gene is slyA [C]

Identifier: 169628076

GI number: 169628076

Start: 988318

End: 988746

Strand: Direct

Name: slyA [C]

Synonym: MAB_0979

Alternate gene names: 169628076

Gene position: 988318-988746 (Clockwise)

Preceding gene: 169628075

Following gene: 169628077

Centisome position: 19.5

GC content: 66.67

Gene sequence:

>429_bases
ATGGAAATCGACGGCACCGCGAGCCTGGGGTACTTGCTGACCCGTACCGCGACATCACTGCGGGGCAAGGTCGCGGCCCG
TTTGGAGCCGATCGGCTTGAGCCTGCCCGAGTACATCTGCATGCGGATTCTGCGTACCTACCCCGGCATGTCCAACTCCG
AACTGGCCAGGCAGGCCATGGTCACCCGGCAGGCGATGAACGCGGTACTGCATCGGTTGGAGGAGGAGGGCCTCATCAGC
CGGCCCGAGAGTGCGGACCACGGCCGGTCGCTGCCTGCCCGCCTGACCCGGCGCGGTAGCACCCAACTGGAGAAGGCGGT
GGAGGCAGTGACCGCGGGTGAGAACGAGGTCATGGAGAAGCTGACCGCCGACGAGCAGCGCGCGTTGAAGGCGATGCTGG
CCAAGTGCGTGCCGAGCCAGCTGCCATGA

Upstream 100 bases:

>100_bases
CGCGAAATTAGTCCCCGGTAACAAGCACAAAGGTCCCCGCGCCCGACACGGCGCGGGGACCTGCTTGTAAGCGGCACTGA
CATAAGTCAACATCATTGAC

Downstream 100 bases:

>100_bases
GACGTGCCGGCTGGCTGATCGCTTTCACTGGTCTGGTGATCGGGTTCAGCGTGTGGCTGCCGTGGCTGCGCACCTCGGCC
AGCGGTGGAGGCAGAGCCAA

Product: putative HTH-type transcriptional regulator MarR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MEIDGTASLGYLLTRTATSLRGKVAARLEPIGLSLPEYICMRILRTYPGMSNSELARQAMVTRQAMNAVLHRLEEEGLIS
RPESADHGRSLPARLTRRGSTQLEKAVEAVTAGENEVMEKLTADEQRALKAMLAKCVPSQLP

Sequences:

>Translated_142_residues
MEIDGTASLGYLLTRTATSLRGKVAARLEPIGLSLPEYICMRILRTYPGMSNSELARQAMVTRQAMNAVLHRLEEEGLIS
RPESADHGRSLPARLTRRGSTQLEKAVEAVTAGENEVMEKLTADEQRALKAMLAKCVPSQLP
>Mature_142_residues
MEIDGTASLGYLLTRTATSLRGKVAARLEPIGLSLPEYICMRILRTYPGMSNSELARQAMVTRQAMNAVLHRLEEEGLIS
RPESADHGRSLPARLTRRGSTQLEKAVEAVTAGENEVMEKLTADEQRALKAMLAKCVPSQLP

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 15563; Mature: 15563

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDGTASLGYLLTRTATSLRGKVAARLEPIGLSLPEYICMRILRTYPGMSNSELARQAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
VTRQAMNAVLHRLEEEGLISRPESADHGRSLPARLTRRGSTQLEKAVEAVTAGENEVMEK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
LTADEQRALKAMLAKCVPSQLP
HCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEIDGTASLGYLLTRTATSLRGKVAARLEPIGLSLPEYICMRILRTYPGMSNSELARQAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
VTRQAMNAVLHRLEEEGLISRPESADHGRSLPARLTRRGSTQLEKAVEAVTAGENEVMEK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
LTADEQRALKAMLAKCVPSQLP
HCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]