| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is yjgI [H]
Identifier: 169627926
GI number: 169627926
Start: 823323
End: 824066
Strand: Direct
Name: yjgI [H]
Synonym: MAB_0827
Alternate gene names: 169627926
Gene position: 823323-824066 (Clockwise)
Preceding gene: 169627924
Following gene: 169627927
Centisome position: 16.25
GC content: 61.83
Gene sequence:
>744_bases ATGACGTCACCATTGAAGAGCCGTCGCGCGTTTGTGACGGGCGGATCGCGCGGCATCGGCGCGGGCATTGTCCGCAGGCT CGCCGAAGACGGGGCACGGGTCGTCTTCACCTATTCGAGTTCGGTGCAACAGGCCGCCGATGTCGTGGACGACATCAACG AGGACGGTGGCTGGGCACGGGCCGTCAAGGCAGATGTAGCCGATCCGGACCAGCTTGGCGCGGCCATCGGTCAGGCAGCG GAAGAGCTTGGCGGACTCGATATCCTGGTGAACAATGCCGGTATCTTGTCAATCGGCGATGTAGATACCGCTACCTTGGC GGACTTCGACGAGATTGTGGCCGTCAACGTTCGTGCGGTTTTTGCCGGAATCAAGGCGGCGTCACCGCACCTCACCGAGG GCGGCAGAATCGTGACGATCGGCAGCATCAACGGAGATAGTTCTCCCACAGCTAACCTGTCGCTGTATTCCATGACGAAA GCGGCGGTGGCGGGCCTCACGCGTGGATTGGCGCGCGAGTTCGGCCCCCGGGGCATAACCATCAACAATGTTCAGCCCGG GCCCATCGGTACCGACATGAACCCCGAGGACGGCCAGCTGGCAGACATTCTGAGGCCCAATATCGCGGTCGGGCGCTATG GTCAGCCCCGCGATATCGCCAGCCTGGTGAGTTATCTGGTATCCGACGAGGCCTGGTACATCACCGGAACCGCGATCAAC ATCGACGGCGGATTCACCGCTTAA
Upstream 100 bases:
>100_bases AGTATGCCCGTGGTGTGTACACACCGCGGCTGTTTGGTGTGACGGGGAATGTTTCGGACCCCAGTCCGCTTGAAAGTCAT GTATCTACGGAAGGAGCACC
Downstream 100 bases:
>100_bases TCGAAAGGTTGTTTGAAGATGACTCTTGAAAGAATTACCGACAAATTGGTTGAAATGACGCCATTTGTACTGTCGATATT GCGTGTGGTGGTGGGCTTTC
Product: putative short-chain dehydrogenase/reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MTSPLKSRRAFVTGGSRGIGAGIVRRLAEDGARVVFTYSSSVQQAADVVDDINEDGGWARAVKADVADPDQLGAAIGQAA EELGGLDILVNNAGILSIGDVDTATLADFDEIVAVNVRAVFAGIKAASPHLTEGGRIVTIGSINGDSSPTANLSLYSMTK AAVAGLTRGLAREFGPRGITINNVQPGPIGTDMNPEDGQLADILRPNIAVGRYGQPRDIASLVSYLVSDEAWYITGTAIN IDGGFTA
Sequences:
>Translated_247_residues MTSPLKSRRAFVTGGSRGIGAGIVRRLAEDGARVVFTYSSSVQQAADVVDDINEDGGWARAVKADVADPDQLGAAIGQAA EELGGLDILVNNAGILSIGDVDTATLADFDEIVAVNVRAVFAGIKAASPHLTEGGRIVTIGSINGDSSPTANLSLYSMTK AAVAGLTRGLAREFGPRGITINNVQPGPIGTDMNPEDGQLADILRPNIAVGRYGQPRDIASLVSYLVSDEAWYITGTAIN IDGGFTA >Mature_246_residues TSPLKSRRAFVTGGSRGIGAGIVRRLAEDGARVVFTYSSSVQQAADVVDDINEDGGWARAVKADVADPDQLGAAIGQAAE ELGGLDILVNNAGILSIGDVDTATLADFDEIVAVNVRAVFAGIKAASPHLTEGGRIVTIGSINGDSSPTANLSLYSMTKA AVAGLTRGLAREFGPRGITINNVQPGPIGTDMNPEDGQLADILRPNIAVGRYGQPRDIASLVSYLVSDEAWYITGTAINI DGGFTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=35.0806451612903, Blast_Score=122, Evalue=2e-28, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=32.6530612244898, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI66933014, Length=193, Percent_Identity=35.7512953367876, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=31.7796610169492, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=31.7460317460317, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.241935483871, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=30.1587301587302, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=34.1968911917098, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=32.6424870466321, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=30.0813008130081, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=33.8709677419355, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI59889578, Length=238, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=28.2722513089005, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4758504, Length=266, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4503301, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI31542939, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=44.5833333333333, Blast_Score=189, Evalue=1e-49, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=36.4705882352941, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=36.734693877551, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=35.5102040816327, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=34.5528455284553, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=31.6666666666667, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=29.5275590551181, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=26.4227642276423, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=30.0395256916996, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=28.968253968254, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=29.1338582677165, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787820, Length=225, Percent_Identity=24, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1788891, Length=198, Percent_Identity=32.3232323232323, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=33.4630350194552, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=32.6923076923077, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=29.7959183673469, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=31.0483870967742, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17561402, Length=262, Percent_Identity=33.969465648855, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.9365079365079, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=29.9610894941634, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=29.7872340425532, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=30.6513409961686, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=30.8300395256917, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=30.2325581395349, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=29.3233082706767, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=255, Percent_Identity=30.1960784313725, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=27.7992277992278, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.3893129770992, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17563726, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565030, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538182, Length=265, Percent_Identity=30.9433962264151, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=27.3809523809524, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17558628, Length=193, Percent_Identity=27.979274611399, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=28.030303030303, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17544670, Length=258, Percent_Identity=25.968992248062, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17568967, Length=242, Percent_Identity=30.9917355371901, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI72000259, Length=253, Percent_Identity=27.6679841897233, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17560220, Length=256, Percent_Identity=28.125, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=28.2442748091603, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17561272, Length=200, Percent_Identity=27.5, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17508895, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17542178, Length=219, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=29.6442687747036, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=25.7692307692308, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.1285140562249, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=31.4741035856574, Blast_Score=120, Evalue=6e-28, Organism=Drosophila melanogaster, GI24644339, Length=243, Percent_Identity=30.4526748971193, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=34, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=31.8897637795276, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644337, Length=206, Percent_Identity=33.0097087378641, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=30.5220883534137, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=27.6381909547739, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI116007236, Length=232, Percent_Identity=28.448275862069, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007234, Length=214, Percent_Identity=30.3738317757009, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=28.1368821292776, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24648944, Length=230, Percent_Identity=28.695652173913, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=29.2887029288703, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648693, Length=246, Percent_Identity=28.8617886178862, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355889, Length=246, Percent_Identity=28.8617886178862, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI18859837, Length=234, Percent_Identity=32.0512820512821, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI116007232, Length=177, Percent_Identity=31.638418079096, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007238, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25469; Mature: 25338
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPLKSRRAFVTGGSRGIGAGIVRRLAEDGARVVFTYSSSVQQAADVVDDINEDGGWAR CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCEEE AVKADVADPDQLGAAIGQAAEELGGLDILVNNAGILSIGDVDTATLADFDEIVAVNVRAV EEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHCHHHHHHHHHHHH FAGIKAASPHLTEGGRIVTIGSINGDSSPTANLSLYSMTKAAVAGLTRGLAREFGPRGIT HHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEE INNVQPGPIGTDMNPEDGQLADILRPNIAVGRYGQPRDIASLVSYLVSDEAWYITGTAIN ECCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEE IDGGFTA ECCCCCC >Mature Secondary Structure TSPLKSRRAFVTGGSRGIGAGIVRRLAEDGARVVFTYSSSVQQAADVVDDINEDGGWAR CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCEEE AVKADVADPDQLGAAIGQAAEELGGLDILVNNAGILSIGDVDTATLADFDEIVAVNVRAV EEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCHHHHCHHHHHHHHHHHH FAGIKAASPHLTEGGRIVTIGSINGDSSPTANLSLYSMTKAAVAGLTRGLAREFGPRGIT HHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEE INNVQPGPIGTDMNPEDGQLADILRPNIAVGRYGQPRDIASLVSYLVSDEAWYITGTAIN ECCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEE IDGGFTA ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]