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The map label for this gene is yjfH [C]

Identifier: 169627675

GI number: 169627675

Start: 571441

End: 572388

Strand: Direct

Name: yjfH [C]

Synonym: MAB_0572

Alternate gene names: 169627675

Gene position: 571441-572388 (Clockwise)

Preceding gene: 169627674

Following gene: 169627676

Centisome position: 11.28

GC content: 68.57

Gene sequence:

>948_bases
ATGGCAGGTAATTCGCAGCGCCGCGGCGCGGTACGTAAGCCCGGCACCAAAAAGGGCCCCACTGTCGGCTCGGGCGGCGT
GCGCCGCCGCGGGCTGGAGGGCAAGGGGGCGACGCCTCCGGCGGAGCAGCGCACCAAACATCCCGCCGCCAAGCGTGCTG
CCGTCCAAAGGAAAATCGCGGACGCCAAGCAGCGCCGGCTCAAGCAGGGCGATGAGGCCGAGATGGTGCTGGGCCGCAAC
CCGGTGCTGGAGTGCCTGCGTACCGGTGTCCCGGCGACGGCGCTGTATGTGGCCGTCGGCGCCGACAACGATGAGCGGCT
GACCGAATCGGTGGCGCTGGCCGCCGACGCCGGCATCGCGATCCTGGAGGTGCCGCGTCCCGATCTGGACCGCATGAGCA
CCAACGGATTACATCAGGGCCTTGCGTTGCAGATCCCGCCGTACAAGTACGCGCATCCCGACGACCTGCTGGCGCGCGCT
CGTGCGGAGGCACAGCCCGCGCTGTTGGTAGCGCTGGACAACATCTCGGACCCACGTAATCTCGGTGCCATCGTGCGTTC
CGTGGCTGCCTTCGGTGGTCATGGCGTCGTCATCCCCCAGCGTCGCAGTGCGTCGGTCACCGCCGTTGCCTGGCGCACCA
GTGCGGGTGCCGCGGCACGTCTTCCTGTCGCGCGTGCCACGAATCTGACCCGCACCCTGAAGGATTGGCAGGACAAGGGC
ATCACCATTGTCGGACTTGACGCCGGCGGCGACACCGAGCTCGACAACCTCGACGGCGTGGGCGATATCGCTGTCGTGGT
GGGGTCGGAGGGCAAGGGGCTGTCGCAGCTGGTCCGCAAGACCTGCGACGCCGTGGTGTCGATTCCGATGGCAGGGCCCG
TCGAATCGTTGAATGCGTCGGTGGCCGCAGGGGTAGTGCTCGCGGAGATCGCCCGCCAGCGCCGCTGA

Upstream 100 bases:

>100_bases
GAGATCAGAGATCGGCTCAAGCGCGCGGGTCTGGAGATCACCGACACGGCCGATGGCCCGCAATGGACCCTTACCAGTAG
CGACGAAGAGCAGTACCATC

Downstream 100 bases:

>100_bases
GCATCTTTTGCCGAAATGACATTCACGCAGGTGTCTCCTGGCGTTTCACCCACATAGATGTCATCTCGGGCACAATGTGC
AGCCATGAAGCGCATAGCTG

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MAGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRN
PVLECLRTGVPATALYVAVGADNDERLTESVALAADAGIAILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARA
RAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKG
ITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQRR

Sequences:

>Translated_315_residues
MAGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRN
PVLECLRTGVPATALYVAVGADNDERLTESVALAADAGIAILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARA
RAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKG
ITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQRR
>Mature_314_residues
AGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRNP
VLECLRTGVPATALYVAVGADNDERLTESVALAADAGIAILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARAR
AEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGI
TIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQRR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family

Homologues:

Organism=Homo sapiens, GI40068479, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI1790623, Length=242, Percent_Identity=37.603305785124, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1788935, Length=210, Percent_Identity=30, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=29.0697674418605, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=267, Percent_Identity=29.2134831460674, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y572_MYCA9 (B1MGY6)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001701324.1
- ProteinModelPortal:   B1MGY6
- SMR:   B1MGY6
- EnsemblBacteria:   EBMYCT00000004319
- GeneID:   5963108
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_0572
- GeneTree:   EBGT00050000015604
- HOGENOM:   HBG714057
- OMA:   MTASAWK
- BioCyc:   MABS561007:MAB_0572-MONOMER
- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123
- SMART:   SM00967
- TIGRFAMs:   TIGR00186

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind

EC number: 2.1.1.- [C]

Molecular weight: Translated: 32880; Mature: 32749

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: BINDING 268-268 BINDING 288-288 BINDING 297-297

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
DAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVGADNDERLTESVALAADAGIA
HHHHHHHHCCCCCCEEECCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEE
ILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRN
EEECCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHH
LGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKG
HHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
ITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNAS
CEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHH
VAAGVVLAEIARQRR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGNSQRRGAVRKPGTKKGPTVGSGGVRRRGLEGKGATPPAEQRTKHPAAKRAAVQRKIA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
DAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVGADNDERLTESVALAADAGIA
HHHHHHHHCCCCCCEEECCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEE
ILEVPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRN
EEECCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHH
LGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKG
HHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
ITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNAS
CEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHH
VAAGVVLAEIARQRR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA