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The map label for this gene is lytR [H]

Identifier: 169627663

GI number: 169627663

Start: 560749

End: 562293

Strand: Direct

Name: lytR [H]

Synonym: MAB_0560

Alternate gene names: 169627663

Gene position: 560749-562293 (Clockwise)

Preceding gene: 169627662

Following gene: 169627664

Centisome position: 11.07

GC content: 63.43

Gene sequence:

>1545_bases
ATGAGCCGCGACACGGGTCGCAGGCGGCCAAAACACGCACTACCTAAATCGAATAAGCGCTGGTCAGTTAGTAAAACCGC
GGCCGCGCGGACCATTTTCGCGCTGCTGGCCTGCGGCAGTTTGGTAGTAACCGGTGCGGGCTGGCAGGTCTTCTACAAGG
CGTTCAGTCATGTGCCCACCTCCGGAGCGGAGGCCGAGGGCGGCAAGTCCAGCGACGGCTCCATGAACATGCTGCTGATC
GGTCTGGACTCGCGGAAGGACCAAGACGGCAACGACCTGCCCAGGGCGGTCCTGAACCAGCTGCACGCGGGCGATTCGGA
TGCCGGTGGCTACAACACCAACACCCTGATCCTGGTGCACGTGGGCGCGGACAACAAGGTCACCGCGTTCTCGATCCCTC
GTGATGACTGGGTGCCCGCAGAAGGCATACCCGGCTACAAGCACATCAAGATCAAGGAAGCCTATGGCCTCACCAAGGCC
AATGAGGCGGACAAGCTCGTCAACGAGGGCATCACCGACCAAGCGACGCTGGAGCAGCAGAGCCGTGAGGCCGGTCGGCG
CGCCACGCTCAATGCCGTACACCGGCTGACCGGTCAGCCCATCGATTACTTCGCAGAGGTCAACCTGGTCGGCTTCTATG
ACCTGGCTTCCGAGCTCGGCGGCATCACCGTCTGCCTGAACAACGCCGTCTACGACAGCTACTCGGGTGCCAACTTCCCC
GCCGGGGAACAGACCCTCAACGCCTCCCAGGCCCTGGCGTTTGTACGTCAGCGTCATGGGCTGGAAAACGGCGATCTGGA
CCGCACCCACCGTCAGCAGGCGTTTCTGATCTCGGTGATGCAGCAGCTCCGCAATGCGGGCACCCTTACCGACATCACCA
AGCTGAACGGGCTGATGAACGTCGTCCACAAGGATGTCGTGCTTTCGAAGGGCTGGACCGAGAAGCAGTTCCAGCGCCTC
GGGCAGATCGCCGACGGCAACGTGAACTTCCAGACGCTGCCCGTGGTGCGATACGACAACATCAACGGTGCGGACGTCAA
TATCGTGGACCCGGTAGCGATTCGGGCCAAGGTGGCAGCCGCGTTCAAGGGCGAGGACGCCGCCCCCGCCTCCGCCGCGA
CGACACCAACCAGCACCGTCGATGTCGTGAACGCCACCTCTACATCCGGCCTGGCATCGACGGTGTCATCTGCACTGGTC
AGCCGTGGTTATACCAAGGGCGATGTGCGGGATCCGCTGAGTGGCGAATCAACCGGCACCGCCATCGATTACGGTGTCGG
CGCCGACGCGGATGCCAAGGCGATGTCCACCATGTTGGGTATCGAGACAGAGCCCGTCGCGGATCCCACGTTGGCGCCCG
GACGAATTCGCGTCATGTTGGGCACCGGGTACTCCGCGCCCAGTGACGTCCTGAGCGCTGAGGACAGCGGGACCGCGAGC
TCGATGTCCAGCTCGTCCAGTTCGGGGGCGTCCGGAGACTATGCGCCGCCGGACTCGGGAAAGCCCGTGGTCAGCAGCAA
CAGCGGCGTCCCTTGCGTGAACTAG

Upstream 100 bases:

>100_bases
TTGACGCCTGTGATGGGAGAATTAGAACGAATGCAGATTTCTCTGGGGGAGGGATGGGTAGTTCGGTGTGTACGTTGCTG
CCACGCGGGGGTGGCGACTG

Downstream 100 bases:

>100_bases
CCCGGACGACCTTAAAGCACGCTCCGGTAGCCCCCCCAAAAAATAGCCCCAATAGCCCCCAAATAGCACTGTGACGTGTG
TGTAGCTCGCCGACACGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MSRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPTSGAEAEGGKSSDGSMNMLLI
GLDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILVHVGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKA
NEADKLVNEGITDQATLEQQSREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANFP
AGEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLMNVVHKDVVLSKGWTEKQFQRL
GQIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVAAAFKGEDAAPASAATTPTSTVDVVNATSTSGLASTVSSALV
SRGYTKGDVRDPLSGESTGTAIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPSDVLSAEDSGTAS
SMSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN

Sequences:

>Translated_514_residues
MSRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPTSGAEAEGGKSSDGSMNMLLI
GLDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILVHVGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKA
NEADKLVNEGITDQATLEQQSREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANFP
AGEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLMNVVHKDVVLSKGWTEKQFQRL
GQIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVAAAFKGEDAAPASAATTPTSTVDVVNATSTSGLASTVSSALV
SRGYTKGDVRDPLSGESTGTAIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPSDVLSAEDSGTAS
SMSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN
>Mature_513_residues
SRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPTSGAEAEGGKSSDGSMNMLLIG
LDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILVHVGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKAN
EADKLVNEGITDQATLEQQSREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANFPA
GEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLMNVVHKDVVLSKGWTEKQFQRLG
QIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVAAAFKGEDAAPASAATTPTSTVDVVNATSTSGLASTVSSALVS
RGYTKGDVRDPLSGESTGTAIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPSDVLSAEDSGTASS
MSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53967; Mature: 53835

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPT
CCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCC
SGAEAEGGKSSDGSMNMLLIGLDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILVH
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
VGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKANEADKLVNEGITDQATLEQQ
ECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHCCCCCHHHHHHH
SREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANFP
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCEEEEECCCHHCCCCCCCCC
AGEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLMN
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VVHKDVVLSKGWTEKQFQRLGQIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVAA
HHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEECCHHHHHHHHH
AFKGEDAAPASAATTPTSTVDVVNATSTSGLASTVSSALVSRGYTKGDVRDPLSGESTGT
HHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPSDVLSAEDSGTAS
EEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCHH
SMSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN
HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
>Mature Secondary Structure 
SRDTGRRRPKHALPKSNKRWSVSKTAAARTIFALLACGSLVVTGAGWQVFYKAFSHVPT
CCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCC
SGAEAEGGKSSDGSMNMLLIGLDSRKDQDGNDLPRAVLNQLHAGDSDAGGYNTNTLILVH
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
VGADNKVTAFSIPRDDWVPAEGIPGYKHIKIKEAYGLTKANEADKLVNEGITDQATLEQQ
ECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHCCCCCHHHHHHH
SREAGRRATLNAVHRLTGQPIDYFAEVNLVGFYDLASELGGITVCLNNAVYDSYSGANFP
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCEEEEECCCHHCCCCCCCCC
AGEQTLNASQALAFVRQRHGLENGDLDRTHRQQAFLISVMQQLRNAGTLTDITKLNGLMN
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VVHKDVVLSKGWTEKQFQRLGQIADGNVNFQTLPVVRYDNINGADVNIVDPVAIRAKVAA
HHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEEECCHHHHHHHHH
AFKGEDAAPASAATTPTSTVDVVNATSTSGLASTVSSALVSRGYTKGDVRDPLSGESTGT
HHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AIDYGVGADADAKAMSTMLGIETEPVADPTLAPGRIRVMLGTGYSAPSDVLSAEDSGTAS
EEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCHH
SMSSSSSSGASGDYAPPDSGKPVVSSNSGVPCVN
HCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA