| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is xynD [H]
Identifier: 169627563
GI number: 169627563
Start: 459667
End: 460533
Strand: Reverse
Name: xynD [H]
Synonym: MAB_0459c
Alternate gene names: 169627563
Gene position: 460533-459667 (Counterclockwise)
Preceding gene: 169627566
Following gene: 169627558
Centisome position: 9.09
GC content: 65.17
Gene sequence:
>867_bases GTGGGTACAGTGCTCGATTCGGTGCGATTTCAGATAGCGGCGGTCGCGGTGGTGCTGGTGGCCGCGGCCGGGGTGGTCGG CATCGGGGTGCGCCACCGGTTGTTGCTGGGCCCGGACACGGTGGACTGCTCCCGTTACAAATGTGTGGCACTGACGTTCG ACGATGGCCCCACGCCGTTTACCGACCGGTTGTTGCAGACGCTGACTGACCGCGGCGCCAAGGCCACGTTTTTCCTGATC GGTAACAAGGTCGCCGCTGACCCTGCTGCGGCCCGGCGCATCGCCGCGGCGGGGATGGAGGTGGCCAACCACACCTGGGA GCACCCCAATATGGCCACCATCCCCACCGCCGATATCGGCGCCCAGCTCAGCAAAGGTGTCGAGGCGATCGCGGCGGCCA CCGGGATCGCCCCGCATCTGTACCGGCCTGCTGGGGGAGTATCGAATGCGGCGGTGCGCGCCGAGGCGGGCCGTCAGCAT TTGGCCGAAATCTTGTGGGATGTCATACCGTTCGACTGGATCAATGACGCCGATACCGCCGCCACCGTGTACATGCTCAA AACCCAGATCAAACCCGGTTCGGTGGTGCTGCTGCACGACACCTACTCGAGCACCGTCGATATCGTCTACCAGTTCCTGC CGGTGCTGATTGCCAATGGCTACCACATGGTCACCGTCAGCCACCTGCTCGGCGACCGCGCTCCCGGCACCAGTTACGGG GGCCGCGAAAACGGTCCGCCCGTCAACGACATTCACGACATTCCGCCCGCCCAGATCCCTGTTCTGCCGGCCACGCCCTC ACCCCAACCAGCACCCAATCTGCCGATCACCGACATCGCAGGCCAAAACCCCGGCGGGCCCCAATGA
Upstream 100 bases:
>100_bases TGTCCAGGAACGCGTGCAAGGATGCCCCCCACGGGTATGGCCCGGTTGCGGTGCACAGGGCGCGGCCGGCGCTTGCCGAA TAGGTGCAGGAGGTGGATCT
Downstream 100 bases:
>100_bases TCGGGGCGTAAACCAGCTGATTCGGCAGTCCTCATGGCTGCTCGCTGCGGCCGGCCGCGCCCCCGGGCGCCACCAAGGTG TCCGCACCGGTGTCCTCACC
Product: glycosylhydrolase
Products: NA
Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MGTVLDSVRFQIAAVAVVLVAAAGVVGIGVRHRLLLGPDTVDCSRYKCVALTFDDGPTPFTDRLLQTLTDRGAKATFFLI GNKVAADPAAARRIAAAGMEVANHTWEHPNMATIPTADIGAQLSKGVEAIAAATGIAPHLYRPAGGVSNAAVRAEAGRQH LAEILWDVIPFDWINDADTAATVYMLKTQIKPGSVVLLHDTYSSTVDIVYQFLPVLIANGYHMVTVSHLLGDRAPGTSYG GRENGPPVNDIHDIPPAQIPVLPATPSPQPAPNLPITDIAGQNPGGPQ
Sequences:
>Translated_288_residues MGTVLDSVRFQIAAVAVVLVAAAGVVGIGVRHRLLLGPDTVDCSRYKCVALTFDDGPTPFTDRLLQTLTDRGAKATFFLI GNKVAADPAAARRIAAAGMEVANHTWEHPNMATIPTADIGAQLSKGVEAIAAATGIAPHLYRPAGGVSNAAVRAEAGRQH LAEILWDVIPFDWINDADTAATVYMLKTQIKPGSVVLLHDTYSSTVDIVYQFLPVLIANGYHMVTVSHLLGDRAPGTSYG GRENGPPVNDIHDIPPAQIPVLPATPSPQPAPNLPITDIAGQNPGGPQ >Mature_287_residues GTVLDSVRFQIAAVAVVLVAAAGVVGIGVRHRLLLGPDTVDCSRYKCVALTFDDGPTPFTDRLLQTLTDRGAKATFFLIG NKVAADPAAARRIAAAGMEVANHTWEHPNMATIPTADIGAQLSKGVEAIAAATGIAPHLYRPAGGVSNAAVRAEAGRQHL AEILWDVIPFDWINDADTAATVYMLKTQIKPGSVVLLHDTYSSTVDIVYQFLPVLIANGYHMVTVSHLLGDRAPGTSYGG RENGPPVNDIHDIPPAQIPVLPATPSPQPAPNLPITDIAGQNPGGPQ
Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 polysaccharide deacetylase domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6323339, Length=208, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323338, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR012291 - InterPro: IPR001919 - InterPro: IPR008985 - InterPro: IPR011330 - InterPro: IPR001137 - InterPro: IPR013319 - InterPro: IPR018208 - InterPro: IPR002509 - InterPro: IPR006311 [H]
Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]
EC number: =3.2.1.8 [H]
Molecular weight: Translated: 30221; Mature: 30090
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTVLDSVRFQIAAVAVVLVAAAGVVGIGVRHRLLLGPDTVDCSRYKCVALTFDDGPTPF CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEEEEECCCCCCH TDRLLQTLTDRGAKATFFLIGNKVAADPAAARRIAAAGMEVANHTWEHPNMATIPTADIG HHHHHHHHHCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHH AQLSKGVEAIAAATGIAPHLYRPAGGVSNAAVRAEAGRQHLAEILWDVIPFDWINDADTA HHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ATVYMLKTQIKPGSVVLLHDTYSSTVDIVYQFLPVLIANGYHMVTVSHLLGDRAPGTSYG EEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCC GRENGPPVNDIHDIPPAQIPVLPATPSPQPAPNLPITDIAGQNPGGPQ CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GTVLDSVRFQIAAVAVVLVAAAGVVGIGVRHRLLLGPDTVDCSRYKCVALTFDDGPTPF CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEEEEECCCCCCH TDRLLQTLTDRGAKATFFLIGNKVAADPAAARRIAAAGMEVANHTWEHPNMATIPTADIG HHHHHHHHHCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHH AQLSKGVEAIAAATGIAPHLYRPAGGVSNAAVRAEAGRQHLAEILWDVIPFDWINDADTA HHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ATVYMLKTQIKPGSVVLLHDTYSSTVDIVYQFLPVLIANGYHMVTVSHLLGDRAPGTSYG EEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCC GRENGPPVNDIHDIPPAQIPVLPATPSPQPAPNLPITDIAGQNPGGPQ CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8170399 [H]