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The map label for this gene is ydeL [H]

Identifier: 169627301

GI number: 169627301

Start: 206233

End: 207666

Strand: Reverse

Name: ydeL [H]

Synonym: MAB_0196c

Alternate gene names: 169627301

Gene position: 207666-206233 (Counterclockwise)

Preceding gene: 169627305

Following gene: 169627300

Centisome position: 4.1

GC content: 70.22

Gene sequence:

>1434_bases
ATGAGTTCGTGGGCCAATTCAGCCAAGGCGGAATCCCGGCCCCTCAGCCACGATCTGCATCTCGACCTGCGCCAGAGCAT
CACGCCCGGCACCCGCGGCGTGCGTGAGCTGCTGACCTCCGCGCTGCGCGACGCCGTCCGCTCGGGTCGCCTCACCGTCG
GGTCCATGCTCCCGCCATCTCGGACCCTGGCCAGTGACCTGGGGCTGGCACGCAACACGGTCGCCGAGGCATATGCCGAA
CTCGTCGCCGAGGGCTGGCTCGAGTCTCGGCAGGGCTCGGGAACCCGGGTGGTCAATCGTGGCAAGGACCAGCTGCCGCC
CCGCCCGCGCGGCGCGGGCACGCCACCACCACACAACCTCATGCCCGGCTCCGGCGACGTCACCGCCTTTCCGCGCGCCG
ACTGGCTCGCCTCCGCGCGCAGGGCGCTGAACCATGCGCCGCACGAGGCCCTGCGGGTCGGCGATCCTCGCGGGCGACAT
GAATTACGTTCTGCTGTAGCCGAATACGTGTCCCGGGTGCGCGGTGTGCGCACCACACCGGACTCGATTCTGATCTGCGC
CGGCACCCGTCACGCCGTGGAGATACTGACGCGGATGTACGGCCTGGCCCGGCCGATAGCAGTGGAGGCATACGGCCTCT
TCATCTTTCGGGATTGCATCGAGGCGACCGGGGGCTCCAGCACCCCGATCGGGTTCGACGGGGAGGGCGCCGTCGTCAGC
GACCTGGAGAATCTCGATACCTCCGCCGCGCTGATTACCCCGGCCCACCACTTCCCCCACGGGCTGCCGCTGCACCCCGC
CCGGCGTACCGCGGTGGTGGACTGGGCGCGGCGCACCGACTCCTATGTCCTCGAAGACGACTACGACGGCGAGTTCCGAT
ACGACCGTCAACCCGTCGGCGCGCTGCAGAGCCTCGATCCGGATCGCGTGGTGTACCTGGGTTCGGCGAGCAAGAGCCTG
GCACCGGCACTGCGTCTGGGCTGGATGGTGCTCCCCCCGGAGCAGATGGACGCCGCGGTGGCGGCCACGGGTGGCGCACA
GTGGTACGTCGGCGCGATCTCCCAGCTGACCATGGCGGATTTCATCGCGGGCGGCCACTATGACCGCCACATCCGCCGCA
TGCGCGGCCGATACCGGCGCCGGCGCGACCTGCTCGTGCAGCGCCTCGCCGGTTACAACGTCGGCGTACGCGGTCTGTCG
GCCGGGCTACACCTGCTGCTGACACTGCCCGAGGGCACTGAATCCGATGTGCTGTACCGGGCCGGCGAGGCCGGGGTGGC
GCTCGCCGGGCTGGCTCGGCTGCGCCATCCACTGGCCGGTCCGCACATCCCCAATCCGGACGGCGTGGTGGTCAGCTTCG
GCACCCCGGCCGATCACGGTTTTGGCCCGGCCGTCGACGCGCTTTGCCGCGTGCTGGCGGCCACCGGACTCTAA

Upstream 100 bases:

>100_bases
GGGCGAGACCTTGTCCATCCGGATGCGCGGTGAATTCAGTGTGCTTGTCATCCCTCAACGCTAAGACCGCAAAGGCCCAT
TCTCATGGTTCAATTCCAGC

Downstream 100 bases:

>100_bases
CCGCGCGATGGCACCGTCTGGCAGTGCCATGCCTCGTCATGGCAGCAGGTCACGACGATGCTCAAGACATGCCAACCTTC
GAATCCGCCGCCGGCCCCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSSWANSAKAESRPLSHDLHLDLRQSITPGTRGVRELLTSALRDAVRSGRLTVGSMLPPSRTLASDLGLARNTVAEAYAE
LVAEGWLESRQGSGTRVVNRGKDQLPPRPRGAGTPPPHNLMPGSGDVTAFPRADWLASARRALNHAPHEALRVGDPRGRH
ELRSAVAEYVSRVRGVRTTPDSILICAGTRHAVEILTRMYGLARPIAVEAYGLFIFRDCIEATGGSSTPIGFDGEGAVVS
DLENLDTSAALITPAHHFPHGLPLHPARRTAVVDWARRTDSYVLEDDYDGEFRYDRQPVGALQSLDPDRVVYLGSASKSL
APALRLGWMVLPPEQMDAAVAATGGAQWYVGAISQLTMADFIAGGHYDRHIRRMRGRYRRRRDLLVQRLAGYNVGVRGLS
AGLHLLLTLPEGTESDVLYRAGEAGVALAGLARLRHPLAGPHIPNPDGVVVSFGTPADHGFGPAVDALCRVLAATGL

Sequences:

>Translated_477_residues
MSSWANSAKAESRPLSHDLHLDLRQSITPGTRGVRELLTSALRDAVRSGRLTVGSMLPPSRTLASDLGLARNTVAEAYAE
LVAEGWLESRQGSGTRVVNRGKDQLPPRPRGAGTPPPHNLMPGSGDVTAFPRADWLASARRALNHAPHEALRVGDPRGRH
ELRSAVAEYVSRVRGVRTTPDSILICAGTRHAVEILTRMYGLARPIAVEAYGLFIFRDCIEATGGSSTPIGFDGEGAVVS
DLENLDTSAALITPAHHFPHGLPLHPARRTAVVDWARRTDSYVLEDDYDGEFRYDRQPVGALQSLDPDRVVYLGSASKSL
APALRLGWMVLPPEQMDAAVAATGGAQWYVGAISQLTMADFIAGGHYDRHIRRMRGRYRRRRDLLVQRLAGYNVGVRGLS
AGLHLLLTLPEGTESDVLYRAGEAGVALAGLARLRHPLAGPHIPNPDGVVVSFGTPADHGFGPAVDALCRVLAATGL
>Mature_476_residues
SSWANSAKAESRPLSHDLHLDLRQSITPGTRGVRELLTSALRDAVRSGRLTVGSMLPPSRTLASDLGLARNTVAEAYAEL
VAEGWLESRQGSGTRVVNRGKDQLPPRPRGAGTPPPHNLMPGSGDVTAFPRADWLASARRALNHAPHEALRVGDPRGRHE
LRSAVAEYVSRVRGVRTTPDSILICAGTRHAVEILTRMYGLARPIAVEAYGLFIFRDCIEATGGSSTPIGFDGEGAVVSD
LENLDTSAALITPAHHFPHGLPLHPARRTAVVDWARRTDSYVLEDDYDGEFRYDRQPVGALQSLDPDRVVYLGSASKSLA
PALRLGWMVLPPEQMDAAVAATGGAQWYVGAISQLTMADFIAGGHYDRHIRRMRGRYRRRRDLLVQRLAGYNVGVRGLSA
GLHLLLTLPEGTESDVLYRAGEAGVALAGLARLRHPLAGPHIPNPDGVVVSFGTPADHGFGPAVDALCRVLAATGL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=409, Percent_Identity=25.6723716381418, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787710, Length=414, Percent_Identity=23.4299516908213, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51293; Mature: 51162

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50949 HTH_GNTR ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSWANSAKAESRPLSHDLHLDLRQSITPGTRGVRELLTSALRDAVRSGRLTVGSMLPPS
CCCCCCCCHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCH
RTLASDLGLARNTVAEAYAELVAEGWLESRQGSGTRVVNRGKDQLPPRPRGAGTPPPHNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPGSGDVTAFPRADWLASARRALNHAPHEALRVGDPRGRHELRSAVAEYVSRVRGVRTTP
CCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
DSILICAGTRHAVEILTRMYGLARPIAVEAYGLFIFRDCIEATGGSSTPIGFDGEGAVVS
CCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
DLENLDTSAALITPAHHFPHGLPLHPARRTAVVDWARRTDSYVLEDDYDGEFRYDRQPVG
HHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEECCCHHH
ALQSLDPDRVVYLGSASKSLAPALRLGWMVLPPEQMDAAVAATGGAQWYVGAISQLTMAD
HHHCCCCCCEEEECCCCHHHHHHHHHCCEEECHHHHHHHHEECCCCHHHHHHHHHHHHHH
FIAGGHYDRHIRRMRGRYRRRRDLLVQRLAGYNVGVRGLSAGLHLLLTLPEGTESDVLYR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEECCCCCCCCCEEE
AGEAGVALAGLARLRHPLAGPHIPNPDGVVVSFGTPADHGFGPAVDALCRVLAATGL
CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSWANSAKAESRPLSHDLHLDLRQSITPGTRGVRELLTSALRDAVRSGRLTVGSMLPPS
CCCCCCCHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCH
RTLASDLGLARNTVAEAYAELVAEGWLESRQGSGTRVVNRGKDQLPPRPRGAGTPPPHNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
MPGSGDVTAFPRADWLASARRALNHAPHEALRVGDPRGRHELRSAVAEYVSRVRGVRTTP
CCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
DSILICAGTRHAVEILTRMYGLARPIAVEAYGLFIFRDCIEATGGSSTPIGFDGEGAVVS
CCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
DLENLDTSAALITPAHHFPHGLPLHPARRTAVVDWARRTDSYVLEDDYDGEFRYDRQPVG
HHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCEEECCCHHH
ALQSLDPDRVVYLGSASKSLAPALRLGWMVLPPEQMDAAVAATGGAQWYVGAISQLTMAD
HHHCCCCCCEEEECCCCHHHHHHHHHCCEEECHHHHHHHHEECCCCHHHHHHHHHHHHHH
FIAGGHYDRHIRRMRGRYRRRRDLLVQRLAGYNVGVRGLSAGLHLLLTLPEGTESDVLYR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCEEEEEECCCCCCCCCEEE
AGEAGVALAGLARLRHPLAGPHIPNPDGVVVSFGTPADHGFGPAVDALCRVLAATGL
CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]