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The map label for this gene is yjiW

Identifier: 16767767

GI number: 16767767

Start: 4777047

End: 4777379

Strand: Reverse

Name: yjiW

Synonym: STM4523

Alternate gene names: 16767767

Gene position: 4777379-4777047 (Counterclockwise)

Preceding gene: 16767768

Following gene: 16767766

Centisome position: 98.35

GC content: 55.26

Gene sequence:

>333_bases
ATGACTACCGTCCATTCTATTGCAGATCCGTGCGATCCAGAAGTCTCCCCAACAAATAACCGTCACCTTACCGTGAGTTA
TGCGAGTCGTTATCCGGATTATACCCGCATTCCCGCCCTCACCATGAAGGGCCAGTGGCTGGAAGCCGCCGGTTTCGCCA
CCGGTACCGAGGTGGATGTGAGGGTGATGAACGGCTGTATTGTGCTGACGGCACAGCAGCCGCAACCAGAAGAAAGCGAG
TTGATGCAGTCGCTGCGCCAGGTGAGCAAGCTATCGGCGCGTAAGCAAAAGCAGGTGCAGGCGTTTATCGACGTGATGGC
AGGTTCTAAGTAA

Upstream 100 bases:

>100_bases
TTTATTTACTGATGTTATGTACAGGTATTTAGCGCGATATGGCCGTGCGGGAACACGGCCATATCGCTCATCACAATCAC
TATTTTAGGGAATAGCCATC

Downstream 100 bases:

>100_bases
ACGCATAAAATAAGCTGGCAAAGAACCCTTGCCAGCTTTAATTATAATTCATATCAATGAGTGAAGGAAAATCATGCGGC
TAAAAGTAAAAGAAAACATT

Product: endoribonuclease SymE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESE
LMQSLRQVSKLSARKQKQVQAFIDVMAGSK

Sequences:

>Translated_110_residues
MTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESE
LMQSLRQVSKLSARKQKQVQAFIDVMAGSK
>Mature_109_residues
TTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESEL
MQSLRQVSKLSARKQKQVQAFIDVMAGSK

Specific function: Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease La

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the symE family

Homologues:

Organism=Escherichia coli, GI145693217, Length=110, Percent_Identity=79.0909090909091, Blast_Score=184, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYME_SALHS (B4TGA3)

Other databases:

- EMBL:   CP001120
- RefSeq:   YP_002048546.1
- ProteinModelPortal:   B4TGA3
- GeneID:   6492044
- GenomeReviews:   CP001120_GR
- KEGG:   seh:SeHA_C4929
- HOGENOM:   HBG468060
- OMA:   YTRIPAI
- ProtClustDB:   PRK13605
- GO:   GO:0005737
- HAMAP:   MF_01193
- InterPro:   IPR020883
- InterPro:   IPR014944

Pfam domain/function: PF08845 DUF1813

EC number: NA

Molecular weight: Translated: 12154; Mature: 12023

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDV
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCEECCCCCCCCCEEEE
RVMNGCIVLTAQQPQPEESELMQSLRQVSKLSARKQKQVQAFIDVMAGSK
EEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKGQWLEAAGFATGTEVDV
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCEECCCCCCCCCEEEE
RVMNGCIVLTAQQPQPEESELMQSLRQVSKLSARKQKQVQAFIDVMAGSK
EEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA