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The map label for this gene is ytfJ [H]

Identifier: 16767651

GI number: 16767651

Start: 4642501

End: 4643058

Strand: Reverse

Name: ytfJ [H]

Synonym: STM4405

Alternate gene names: 16767651

Gene position: 4643058-4642501 (Counterclockwise)

Preceding gene: 16767653

Following gene: 16767649

Centisome position: 95.59

GC content: 51.08

Gene sequence:

>558_bases
ATGACCTTACGTAAAATTCTGGCGATGTCGTGTCTGCTACTCCCCATAATGGCTTGTGCGCATAACCTTGAAGTTAACCA
ACGGGTGCCGCCGGTAGGCATTGCCGACCGTGGCGAACTGACGTTGAATAAAGATGAGTTTAGTTATAAAAACTGGAATA
GCGCGCAGCTGGCGGGAAAAGTGCGCGTCCTGCTGCACATTGCGGGTCGAACGTCAGCGAAGGAAAAAAACGCCACGCTG
ATTGAAGCGATTAAATCAGCCAAGCTCCCGCATGACAGATACCAGACGACCACAATTGTGAACACCGATGATGCGATCCC
AGGCTCCGGTATGTTCGTGCGTAGCAGTATAGAAAGTAATAAAAAGCTCTACCCGTGGTCGCAATTTATTGTCGACAGCA
ATGGCGTGGCGCGTAACGCCTGGCAATTAAAAGAAGAGGGGTCCGCCGTCATCGTGCTTGACAAAGACGGTCGGGTTCAA
TGGGTGAAAGATGGCGCGTTAACCCAGCAAGAGGTACAGCAGGTGGTCGACCTGCTGCATAAGCTCCTCAGTAAATAG

Upstream 100 bases:

>100_bases
CTGGCATCCCCTTTGCGGGAAAAAGCATCAATCGCACATATGATTAACTATCGGCCCAAAGTGGTCGGATCACCTGCAAA
AAAATAAAGAAGGAATGACC

Downstream 100 bases:

>100_bases
TCACCCGGAAGCCGGGGTTAAGGAACGATTCACGAGGGGTATAGTCCAGCGTTTTTCCCTGCCAGTCGTGAACGTGCGCC
CCGGCTGCAACGGCAATGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNKDEFSYKNWNSAQLAGKVRVLLHIAGRTSAKEKNATL
IEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQ
WVKDGALTQQEVQQVVDLLHKLLSK

Sequences:

>Translated_185_residues
MTLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNKDEFSYKNWNSAQLAGKVRVLLHIAGRTSAKEKNATL
IEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQ
WVKDGALTQQEVQQVVDLLHKLLSK
>Mature_184_residues
TLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNKDEFSYKNWNSAQLAGKVRVLLHIAGRTSAKEKNATLI
EAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQW
VKDGALTQQEVQQVVDLLHKLLSK

Specific function: Unknown

COG id: COG3054

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0045 [H]

Homologues:

Organism=Escherichia coli, GI1790662, Length=183, Percent_Identity=85.2459016393443, Blast_Score=329, Evalue=6e-92,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006513 [H]

Pfam domain/function: PF09695 YtfJ_HI0045 [H]

EC number: NA

Molecular weight: Translated: 20577; Mature: 20446

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNKDEFSYKNWNSAQLAGK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHE
VRVLLHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSIESN
EEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCC
KKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQWVKDGALTQQEVQQVVDLLH
CCCCCHHHEEECCCCCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
KLLSK
HHHCC
>Mature Secondary Structure 
TLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNKDEFSYKNWNSAQLAGK
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHE
VRVLLHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSIESN
EEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCC
KKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQWVKDGALTQQEVQQVVDLLH
CCCCCHHHEEECCCCCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHH
KLLSK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7764507; 9298646; 10493123 [H]