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The map label for this gene is psd [H]

Identifier: 16767597

GI number: 16767597

Start: 4592578

End: 4593546

Strand: Reverse

Name: psd [H]

Synonym: STM4348

Alternate gene names: 16767597

Gene position: 4593546-4592578 (Counterclockwise)

Preceding gene: 161353574

Following gene: 16767596

Centisome position: 94.57

GC content: 53.77

Gene sequence:

>969_bases
TTGTTAAACTCATTTAAACTTTCGCTACAATACATTCTGCCGAAACTATGGCTCACTCGCCTGGCGGGCTGGGGCGCAAG
CAAACGAGCAGGATGGCTGACAAAACTGGTTATCGATCTCTTCGTAAAGTATTACAAAGTCGATATGACCGAGGCGCAAA
AACCGGATACCGCCAGCTATCGTACGTTCAATGATTTCTTTGTTCGTCCGCTGCGTGATGACGTGCGTCCGCTCAATACC
GATCCTAACATCCTGGTGATGCCTGCCGACGGCGTGATAAGCCAGTTGGGTCGTATCGAAGAAGATAAAATTTTGCAGGC
CAAAGGCCATAATTACAGCCTTGAGGCGTTGCTGGCGGGTAACTACCTGATGGCGGATAAGTTCCGCAACGGCACGTTTG
TGACCACTTACCTCTCCCCTCGCGACTACCATCGCGTGCATATGCCATGCAACGGCATCCTGCGTGAAATGATCTACGTA
CCGGGCGATCTGTTCTCCGTTAACCATCTGACCGCGCAAAACGTCCCCAACCTGTTTGCCCGCAACGAGCGCGTTATCTG
CCTGTTTGATACCGAGTTCGGCCCTATGGCGCAGATTCTGGTCGGCGCAACTATTGTCGGCAGTATCGAAACCGTCTGGG
CGGGGACCATTACCCCGCCGCGCGAAGGCATCATCAAGCGCTGGACCTGGCCAGAAGGCGAACATGAAGGGTCTGTCGCC
CTGTTGAAAGGCCAGGAGATGGGACGCTTTAAACTGGGTTCCACGGTCATCAACTTATTTGCGCCGGGAAAAGTGAATCT
GATCGCGTCGCTGGCAAGCCTGTCCGTTACCAAAATTGGCCAACCGCTGGCGACGTCGACCGAAACATTCGTCGCGCCGG
AGGTAGAACCTGCTCCGCTGCCGGCAGAAGAAATTAAAGCCGAACACGACGCCAGCCCGCTGGTTGACAATAAAAAAGAC
GACACCTAA

Upstream 100 bases:

>100_bases
GACGACTGACAGATACGCTAGGCGTCGTTAGAATCGTCCCCTTTTTTCAGGATACCGGTATAACTGCCGGTTCAGGAACA
ACAATGGCCTGGAGGCTACC

Downstream 100 bases:

>100_bases
TCAAGAGAGAATGCTGACGTGCGCCTGATTATCGCTTTTCTGATGGCCTGGTGCCTCAGCACGGGGGCGTTCGCCGCAAC
GGCCCCCGACGCCAAACAAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMTEAQKPDTASYRTFNDFFVRPLRDDVRPLNT
DPNILVMPADGVISQLGRIEEDKILQAKGHNYSLEALLAGNYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPEGEHEGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSVTKIGQPLATSTETFVAPEVEPAPLPAEEIKAEHDASPLVDNKKD
DT

Sequences:

>Translated_322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMTEAQKPDTASYRTFNDFFVRPLRDDVRPLNT
DPNILVMPADGVISQLGRIEEDKILQAKGHNYSLEALLAGNYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPEGEHEGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSVTKIGQPLATSTETFVAPEVEPAPLPAEEIKAEHDASPLVDNKKD
DT
>Mature_322_residues
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMTEAQKPDTASYRTFNDFFVRPLRDDVRPLNT
DPNILVMPADGVISQLGRIEEDKILQAKGHNYSLEALLAGNYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPEGEHEGSVA
LLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSVTKIGQPLATSTETFVAPEVEPAPLPAEEIKAEHDASPLVDNKKD
DT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=307, Percent_Identity=28.9902280130293, Blast_Score=117, Evalue=2e-26,
Organism=Escherichia coli, GI1790604, Length=320, Percent_Identity=93.4375, Blast_Score=627, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71980843, Length=261, Percent_Identity=31.4176245210728, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=261, Percent_Identity=31.4176245210728, Blast_Score=122, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=228, Percent_Identity=31.140350877193, Blast_Score=111, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=35.4037267080745, Blast_Score=83, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24649526, Length=307, Percent_Identity=28.6644951140065, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24649528, Length=307, Percent_Identity=28.6644951140065, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24649524, Length=307, Percent_Identity=28.6644951140065, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 35889; Mature: 35889

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMTEAQKPDTASY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RTFNDFFVRPLRDDVRPLNTDPNILVMPADGVISQLGRIEEDKILQAKGHNYSLEALLAG
CCHHHHHHCHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CEEEEECCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPEGEHEGSVA
CCCEEEEEEECCCCHHHHHHHHHHHHCCCHHEEECCCCCCHHCCEECCCCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSVTKIGQPLATSTETFVAPEVEPAPL
EEECCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCC
PAEEIKAEHDASPLVDNKKDDT
CHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMTEAQKPDTASY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
RTFNDFFVRPLRDDVRPLNTDPNILVMPADGVISQLGRIEEDKILQAKGHNYSLEALLAG
CCHHHHHHCHHHHCCCCCCCCCCEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
NYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFA
CEEEEECCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHCCCHHHH
RNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPEGEHEGSVA
CCCEEEEEEECCCCHHHHHHHHHHHHCCCHHEEECCCCCCHHCCEECCCCCCCCCCCCEE
LLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSVTKIGQPLATSTETFVAPEVEPAPL
EEECCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCC
PAEEIKAEHDASPLVDNKKDDT
CHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA