Click here to switch to the map view.

The map label for this gene is yjcH [H]

Identifier: 16767524

GI number: 16767524

Start: 4513154

End: 4513468

Strand: Reverse

Name: yjcH [H]

Synonym: STM4274

Alternate gene names: 16767524

Gene position: 4513468-4513154 (Counterclockwise)

Preceding gene: 16767525

Following gene: 16767523

Centisome position: 92.92

GC content: 48.57

Gene sequence:

>315_bases
ATGAATGACCAAATTTATCAGCGGATAGAAGACAGTGCGCGTTTCAGGGAATTAGTTGAAAAACGGCAACGGTTTGCCAC
GATTCTGTCGGTTATCATGCTGGCGGTTTATATCAGCTTTATTTTACTGATCGCCTTCGCGCCTGGCTGGCTGGGCACGC
CTCTACATGCGGGAACCAGCGTCACCCGAGGAATTCCCATTGGCGTCGGGGTGATTGTGATTTCTTTTGTGTTGACCGGA
ATTTATATCTGGCGGGCGAACGGCGAATTCGATCGTCTTAATAACGCCGTACTGCATGAGGTGAAAGTATTATGA

Upstream 100 bases:

>100_bases
CAGCAGCATAGTTCAAGTTCACTATGTGGCTGGGGCGCGCGAGTGCGGCCAACGCGCCTGTAGCGCGAAAGACGCAGGGG
GACCTCTGGAGAGCTCTGTG

Downstream 100 bases:

>100_bases
AGAGAGTTCTGACGGCGCTTGCCGCCGCACTCCCCTTCGCCGCTCATGCGGCGGATGCCATTAGCGGCGCGGTTGAACGC
CAGCCCACCAACTGGCAGGC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNAVLHEVKVL

Sequences:

>Translated_104_residues
MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNAVLHEVKVL
>Mature_104_residues
MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVIVISFVLTG
IYIWRANGEFDRLNNAVLHEVKVL

Specific function: Unknown

COG id: COG3162

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790504, Length=102, Percent_Identity=89.2156862745098, Blast_Score=185, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007436 [H]

Pfam domain/function: PF04341 DUF485 [H]

EC number: NA

Molecular weight: Translated: 11701; Mature: 11701

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLIAFAPGWLGTPLHAGTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNAVLHEVKVL
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLIAFAPGWLGTPLHAGTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNAVLHEVKVL
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]