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The map label for this gene is yijC [H]

Identifier: 16767391

GI number: 16767391

Start: 4345579

End: 4346214

Strand: Direct

Name: yijC [H]

Synonym: STM4127

Alternate gene names: 16767391

Gene position: 4345579-4346214 (Clockwise)

Preceding gene: 16767389

Following gene: 16767392

Centisome position: 89.46

GC content: 55.19

Gene sequence:

>636_bases
GTGATGGGTGTTAGAGCGCAACAAAAAGAAAAAACCCGGCGTTCGCTGGTGGAAGCCGCATTCAGCCAACTGAGCGCTGA
GCGGAGTTTTGCCAGCCTGAGTTTGCGTGAGGTGGCGCGTGAAGCGGGCATTGCGCCAACGTCGTTTTACCGTCATTTTC
GCGATGTCGATGAACTCGGTCTGACGATGGTGGATGAAAGCGGTCTGATGCTGCGTCAGTTGATGCGTCAGGCGCGACAG
CGTATCGCGAAAGGCGGCAGCGTCATTCGCACGTCGGTCTCCACATTTATGGAGTTTATCGGCAACAACCCCAACGCCTT
CCGTCTGTTATTGCGCGAACGTTCCGGCACTTCAGCGGCGTTTCGTGCCGCCGTCGCACGGGAGATTCAGCACTTTATTG
CGGAACTTGCCGACTATCTGGAACTCGAAAACCATATGCCGCGCGCGTTTACTGAAGCCCAGGCCGAAGCGATGGTAACT
ATTGTCTTTAGCGCGGGCGCAGAGGCGTTGGACATCGGCGCTGAACAGCGTCGGCAATTAGAAGAGCGGCTGGTATTGCA
ACTGCGCATGATTGCGAAAGGGGCGTATTACTGGTATCGCCGTGAGCAAGAGAAAATAGCACATCATTCCGAATAA

Upstream 100 bases:

>100_bases
ACAAACTGTCTGTAAACAATCATTCACAATCCAGTGTGAACCCGTTACTTTTATTCTCTGGTATAGTGCCGAATAAGGCA
TATGGAAGGATTCAGACATT

Downstream 100 bases:

>100_bases
CGTGAAGGACGAGTAATGAAACAGTCAGGTCAAGATAAAGGTACGCTGTTGCTGGCGCTCATCGCTGGCTTATCGATTAA
CGGCACATTCGCGGCGCTGT

Product: DNA-binding transcriptional repressor FabR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQ
RIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
IVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYRREQEKIAHHSE

Sequences:

>Translated_211_residues
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQ
RIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
IVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYRREQEKIAHHSE
>Mature_211_residues
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQ
RIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
IVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYRREQEKIAHHSE

Specific function: Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, fabR directly influences the physical properties of the membrane bilayer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=206, Percent_Identity=98.0582524271845, Blast_Score=407, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24042; Mature: 24042

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
FRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDIGAEQRRQL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHH
EERLVLQLRMIAKGAYYWYRREQEKIAHHSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAA
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
FRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDIGAEQRRQL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHH
EERLVLQLRMIAKGAYYWYRREQEKIAHHSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA