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The map label for this gene is yiiZ

Identifier: 16767320

GI number: 16767320

Start: 4265227

End: 4266210

Strand: Reverse

Name: yiiZ

Synonym: STM4054

Alternate gene names: 16767320

Gene position: 4266210-4265227 (Counterclockwise)

Preceding gene: 16767324

Following gene: 16767319

Centisome position: 87.83

GC content: 53.15

Gene sequence:

>984_bases
ATGAAGCAACCTGGTTTTATACGTCTGGCTACGTTGGCCTTACTCTCCACACTCTCTTTCTTCTCCCACGGCGAAACCAT
TTTGCGCCTGGCCTACGCTGAAAATAGCCAGCCGGTAAAAGATGCGTTGCACTTCCTGGGGCAGCAAGTGGAAGAGAAAA
CGGGCGGCGATATCAAAGTACAGTACTTCCCGGACGGACAGCTTGGCGGCGAGCGCGAACTGGTGGAGTTGACGCAGGTC
GGCGTCGTCGACATCACTAAAGTGTCGTCCGGGCTGATGGAGAGTTTTTCGCCTGAGTACGGCGTGTTCTCACTTCCCTA
CCTGTTTGCCACCGTCGAGGAATACTACCGCGTAATGGATAACCCGCAGGTGATGGAGCCTGTTTATCAGTCCACCGCCG
CGCAGGGGTTTATCGGCGTAGGCTGGTATGATTCCGGCGCGCGTAATTTTTATATGAGCAAAGCGCCGATTAAACGCATT
GAGGATTTACGCGGGAAAAAGATCCGCGTCATGCAGAGTGAGACGGCGATCCAAACCCTCAAACTGCTGGGCGCTTCGCC
TATCGCCATGAGCCAGGCGGAGGTCTATACCTCATTACAACAAGGCATTCTCGACGGCGCGGAAAACAATGAGTTCGCTC
TCACCATCGCCCGCCACGGCGAAGTCGCCCGTTATTACACCTACGATATGCACACCCGCATTCCCGATATCCTGCTAATG
AGTACCCTCACGCTGGAAAAGCTGACGCCGGAACAGCAGCGCATCGTCGAAGCCGCCATCAAGGCGTCGATCGAATTTGA
GAAAGCCGCATGGGACAAGGAAATAGAGAAAACCAGGCTGGCGGCGGTAAAAGATTTCAACGTTGAATTCTACGAGATCG
ACAAAAAACCCTTCCAGGAGGCAGTACAGCCTATTTACGACGGTCTGAAAAACAAACCGCGGCTTTACGGGCTGTATCAA
CGTATCCAGACAGCAAAAAATTAA

Upstream 100 bases:

>100_bases
CTTTTGGTGCCAAATTTTGTCAGCGGTGGCAAAATCAAGAAGGTTATAATTTCACACTGCAATTACATTCCCGGTAAATT
ATTACAATTGCGAGGGAATC

Downstream 100 bases:

>100_bases
TCTAATCAGGAAATTAAGATGAACACATTCAGAAAAGGACTTGATTTATTGCTGGGCGCTATCTGTTGCCTGGTGCTGGC
GATAATGGTTGGCATCGCCT

Product: periplasmic dicarboxylate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALHFLGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQV
GVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVMDNPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRI
EDLRGKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPDILLM
STLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQEAVQPIYDGLKNKPRLYGLYQ
RIQTAKN

Sequences:

>Translated_327_residues
MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALHFLGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQV
GVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVMDNPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRI
EDLRGKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPDILLM
STLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQEAVQPIYDGLKNKPRLYGLYQ
RIQTAKN
>Mature_327_residues
MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALHFLGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQV
GVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVMDNPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRI
EDLRGKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPDILLM
STLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQEAVQPIYDGLKNKPRLYGLYQ
RIQTAKN

Specific function: Unknown

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790004, Length=300, Percent_Identity=28.3333333333333, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIIZ_SALTY (P43020)

Other databases:

- EMBL:   AE006468
- EMBL:   U20645
- RefSeq:   NP_462935.1
- GeneID:   1255581
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM4054
- NMPDR:   fig|99287.1.peg.3908
- HOGENOM:   HBG662660
- ProtClustDB:   CLSK894835
- BioCyc:   STYP99287:STM4054-MONOMER
- GO:   GO:0006810
- InterPro:   IPR018389
- InterPro:   IPR004682
- TIGRFAMs:   TIGR00787

Pfam domain/function: PF03480 SBP_bac_7

EC number: NA

Molecular weight: Translated: 36955; Mature: 36955

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALHFLGQQVEEKTGGDIKV
CCCCCHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
QYFPDGQLGGERELVELTQVGVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVMD
EEECCCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHC
NPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRIEDLRGKKIRVMQSETAIQTL
CCHHHHHHHHHHHHCCCEEECEECCCCCCEEECCCHHHHHHHCCCCEEEEEHHHHHHHHH
KLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPDILLM
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEHHHCCHHHHHH
STLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQE
HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AVQPIYDGLKNKPRLYGLYQRIQTAKN
HHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALHFLGQQVEEKTGGDIKV
CCCCCHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
QYFPDGQLGGERELVELTQVGVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVMD
EEECCCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHC
NPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRIEDLRGKKIRVMQSETAIQTL
CCHHHHHHHHHHHHCCCEEECEECCCCCCEEECCCHHHHHHHCCCCEEEEEHHHHHHHHH
KLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPDILLM
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEHHHCCHHHHHH
STLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQE
HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AVQPIYDGLKNKPRLYGLYQRIQTAKN
HHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 7729880