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The map label for this gene is rfaH [H]

Identifier: 16767247

GI number: 16767247

Start: 4182924

End: 4183412

Strand: Reverse

Name: rfaH [H]

Synonym: STM3977

Alternate gene names: 16767247

Gene position: 4183412-4182924 (Counterclockwise)

Preceding gene: 16767252

Following gene: 16767237

Centisome position: 86.12

GC content: 49.28

Gene sequence:

>489_bases
ATGCAATCCTGGTATTTACTGTACTGCAAACGCGGGCAACTTCAGCGTGCTCAGGAACACCTCGAAAGACAAGCGGTAAG
TTGCCTGACACCGATGATCACCCTGGAAAAAATGGTACGCGGAAAACGTACCTCCGTCAGCGAACCGCTCTTTCCTAATT
ATCTGTTCGTTGAATTTGATCCGGAAGTGATACATACCACTACAATCAACGCCACGCGCGGCGTCAGCCATTTTGTGCGC
TTTGGCGCGCATCCTGCGATCGTGCCTTCCAGCGTTATTCATCAGCTTTCTATCTACAAGCCCGAAGGCGTTGTCGATCC
TGAAACCCCCTATCCCGGCGATAGCGTCATCATCACGGAAGGCGCATTTGAAGGGCTGAAAGCGATTTTTACCGAACCGG
ATGGCGAAACGCGTTCGATGTTACTGCTTAATTTACTCAATAAAGAAGTGAAGCAGAGCGTAAAAAACACCGGTTTTCGC
AAGATTTAG

Upstream 100 bases:

>100_bases
CAACGCTAATCCAGATACGGCTTAAAGGATGAAGTGTATAATTAACTTCGCGCATGGCTTTTGCTATGCTTGCGCCCCGA
ACAAGCGGATAAGAGTCATT

Downstream 100 bases:

>100_bases
CGATCGTTCAGAATACAACCTCAAATAAGGTTCTGGCGTTGGCATCTGTCATCGCCGCTAACCATTGCGGATCTTCACCA
CGCCATAGCGCTATGCGCTC

Product: transcriptional activator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVR
FGAHPAIVPSSVIHQLSIYKPEGVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFR
KI

Sequences:

>Translated_162_residues
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVR
FGAHPAIVPSSVIHQLSIYKPEGVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFR
KI
>Mature_162_residues
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVR
FGAHPAIVPSSVIHQLSIYKPEGVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFR
KI

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=162, Percent_Identity=87.6543209876543, Blast_Score=306, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 18304; Mature: 18304

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFD
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
PEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPYPGDSVIITE
CCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
GAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFRKI
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFD
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
PEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPYPGDSVIITE
CCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
GAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFRKI
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]