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The map label for this gene is rarD [H]

Identifier: 16767225

GI number: 16767225

Start: 4160063

End: 4160947

Strand: Reverse

Name: rarD [H]

Synonym: STM3955

Alternate gene names: 16767225

Gene position: 4160947-4160063 (Counterclockwise)

Preceding gene: 161353578

Following gene: 16767224

Centisome position: 85.66

GC content: 53.22

Gene sequence:

>885_bases
ATGGACGCAAAACAAACACGGCAGGGCGTATTACTCGCTCTTGCCGCCTATTTTATTTGGGGGATCGCCCCCGCGTATTT
CAAGCTGATCTATTACGTTCCCGCAGATGAGATCCTGACGCACCGCGTGATTTGGTCATTTTTCTTTATGGTGGCGCTGC
TTAGCGTCAGCCGGCAGTGGCGACAGGTTAAGCGCTTACTGAAAACGCCAAAGAAGATTTTCCTGCTGGCCCTGTCCGCC
GTACTGGTCGGCGGTAACTGGCTATTGTTCATTTGGGCGGTAAATAATCACCATATGCTGGAGGCCAGCCTGGGTTATTT
CATTAATCCGCTGGTTAACATCTTGCTGGGGATGATTTTTCTTGGCGAACGCTTCCGTCGAATGCAGTGGCTGGCGGTGA
TTCTGGCGGTGTGCGGCGTGCTGGTGCAACTCTGGACCTTTGGCTCGCTGCCGATTATCGCGCTGGGGCTGGCGTTTAGT
TTTGCGTTTTACGGCCTGGTGCGTAAGAAGATCGCCGTTGAAGCGCAGACGGGTATGCTGGTTGAAACGCTATGGCTGTT
GCCGGTCGCCGCGATTTATCTGTTTGGCATCGCCGATAGCCCTACCAGCCATATGGGGCAAAACGCACTATCGTTGAACT
TGCTGTTAATGGCGGCGGGTGTGGTCACTACGATTCCGCTGCTGTGCTTCACCGGAGCGGCTACGCGTCTGCGTCTTTCT
ACACTGGGCTTTTTCCAGTATATCGGCCCAACGCTGATGTTTTTACTGGCGGTGACGTTTTATGGCGAAGTGCCGGGCGC
GGATAAGATGGTGACATTTGCGTTTATCTGGGTCGCGCTGGCGATTTTCGTGATGGATGCGATTTATACGCAGCGTAAAA
AATAA

Upstream 100 bases:

>100_bases
CACAATGAAGATCAGCTGTACATCGCCAGCGCCACCGCTACTTATATGGTGGGATAAAAGCAGGTAAACTGTTGTTACAC
TTCAGATACGAGTTTTCCGG

Downstream 100 bases:

>100_bases
CGCGACTATTATTCTAAATATAATCTGAAAAAATATGCCTCCCCTTGTAAGGGGGGTAGCATATTGTCATGCTAACGACG
TAACCCAACATATGGATGTG

Product: chloramphenicol resistance

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQVKRLLKTPKKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFS
FAFYGLVRKKIAVEAQTGMLVETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK

Sequences:

>Translated_294_residues
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQVKRLLKTPKKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFS
FAFYGLVRKKIAVEAQTGMLVETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK
>Mature_294_residues
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQWRQVKRLLKTPKKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFS
FAFYGLVRKKIAVEAQTGMLVETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=90.4436860068259, Blast_Score=547, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32943; Mature: 32943

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVKRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIF
HHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
HHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALLSVSRQW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVKRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIF
HHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
HHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFIWVALAIFVMDAIYTQRKK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]