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The map label for this gene is yifB

Identifier: 16767175

GI number: 16767175

Start: 4106863

End: 4108383

Strand: Reverse

Name: yifB

Synonym: STM3899

Alternate gene names: 16767175

Gene position: 4108383-4106863 (Counterclockwise)

Preceding gene: 16767184

Following gene: 308065951

Centisome position: 84.58

GC content: 52.6

Gene sequence:

>1521_bases
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATAAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAG
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTTGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Upstream 100 bases:

>100_bases
GAAAATGACGCCAAAATTCAGGAAGCAGTCGCTAAAAAACAAAAAGTCAGTAATTCGATTTTCTCTTCTATTCCGCATAA
TCCACGTAACAGGAGGGATT

Downstream 100 bases:

>100_bases
AAAAAGGGCATTACGCCCTTTTTATTAATCATCAGCTTCGGTGTAGTCTTCTGCGCCTTCAACTTGCGGCTTGCCGCCAG
ACAAGGTGTGGAAGCGTTTT

Product: ATP-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Sequences:

>Translated_506_residues
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA
>Mature_505_residues
SLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGRY
DLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHLQ
TVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNEE
ALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIESG
QIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKGE
SSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQIS
RQHLQEAVSYRAIDRLLIHLQKLLA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily

Homologues:

Organism=Escherichia coli, GI145693202, Length=505, Percent_Identity=85.7425742574257, Blast_Score=883, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIFB_SALTY (P57015)

Other databases:

- EMBL:   AF233324
- EMBL:   AE006468
- RefSeq:   NP_462790.1
- ProteinModelPortal:   P57015
- SMR:   P57015
- GeneID:   1255425
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM3899
- NMPDR:   fig|99287.1.peg.3764
- HOGENOM:   HBG665393
- OMA:   NAGFEFP
- ProtClustDB:   PRK09862
- BioCyc:   STYP99287:STM3899-MONOMER
- GO:   GO:0005622
- GO:   GO:0015979
- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078
- SMART:   SM00382
- TIGRFAMs:   TIGR00368

Pfam domain/function: PF01078 Mg_chelatase; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: NA

Molecular weight: Translated: 55014; Mature: 54883

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS00676 SIGMA54_INTERACT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEF
CCEEEEEEHHHCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCC
PAKKITINLAPADLPKEGGRYDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVP
CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
GAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHLQTVCAFLEGKHALERPLAQD
CHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
MASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
HCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCH
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEE
DELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCT
CCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKGESSATVKKRVIAAHERQYRR
HHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
HHHHCCCCCCHHHHHHHEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SRQHLQEAVSYRAIDRLLIHLQKLLA
HHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEF
CEEEEEEHHHCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCC
PAKKITINLAPADLPKEGGRYDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVP
CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
GAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHLQTVCAFLEGKHALERPLAQD
CHHHHHHHHHHCCCEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
MASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
HCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCH
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEE
DELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCT
CCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKGESSATVKKRVIAAHERQYRR
HHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
HHHHCCCCCCHHHHHHHEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SRQHLQEAVSYRAIDRLLIHLQKLLA
HHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609