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The map label for this gene is yidZ [H]

Identifier: 16767132

GI number: 16767132

Start: 4055233

End: 4056192

Strand: Direct

Name: yidZ [H]

Synonym: STM3848

Alternate gene names: 16767132

Gene position: 4055233-4056192 (Clockwise)

Preceding gene: 16767131

Following gene: 16767133

Centisome position: 83.49

GC content: 54.06

Gene sequence:

>960_bases
ATGAAGAAATCCCTTACCAATCTCGACCTTAATTTGCTGTTATGCCTACAGTTACTCATGCAGGAGCGCAGCGTCACTAA
AGCTGCAAAACGGATGAACGTAACGCCCTCAGCGGTCAGCAAATCGCTGGCGAAACTCCGGGCATGGTTTGACGATCCGC
TGTTCGTCAATACGCCGCTGGGCCTGGCGCCGACGCCGCTGATGGTCAGTATGGAGCAAAGTCTGGCGGACTGGATGCAG
ATGGGGAATCAACTGCTTGATAAACCGCATCATCAAACGCCGCGCGGTTTAAAATTTGAGTTGGCAGCAGAGTCGCCGCT
GATGATGATTATGTTTAATTCACTGTCGCAGCAGATTTATCAGCGCTATCCGCAGGCTACCATTAAGGTTCGCAACTGGG
ATTATGACTCGCTGGAGGCGATTACGCGTGGGGAAGTCGATATCGGATTTACCGGACGCGAAAGCCATCCCCGCTCGCGA
GAATTGCTCAGTCTGTTACCGCTCGCGATTGATTTTGAGGTACTGTTTAGCGATTTACCGTGGGTCTGGCTGCGGGAAGA
TCATCCGGCGCTGCGCGAAGCGTGGGATCTGGACACTTTTCTGCGCTACCCACATATCAGTATTTGCTGGGAGCAAAGCG
ATACCTGGGCGCTGGACGATGTCCTGCAAGAAATGGGACGCAAACGCCATATCGCGTTGAGCCTGCCGGGGTTCGAGCAG
TCGCTCTTTATGGCCGCCCAGCCGGGTCACACCCTGATAGCAACCGCGCCGCGCTATTGCCAGCACTACAATCAGCTCCA
CCAGCTACCGTTAGTGGCGCGCCCCCTGCCTTTTGATGCGCAACAGCGGGAAAAGCTGATGGTGCCGTTTACCCTATTAT
GGCACAAACGTAATAGTCATAATCCCAAGATTGTGTGGCTACGACAGGCTATCAACACGCTCTGCCGTCGCCTTATCTGA

Upstream 100 bases:

>100_bases
ATCAGCGCGATGAATATGCTGATCGGGATTCTGATTGGTTGTAGCATAGTGAGTATTCTGCTGATCTTCTCCGTCACGCC
CAACAGGTCCGTAGCCGAGC

Downstream 100 bases:

>100_bases
CCACCTGCGTTGATAAATTAACCTTCCTCTTACCAGAAATGTCACCATCTGATTAAAGAACCTTCTGAAATTGAATTTTT
AGCGCGTAAAACCTGTCCAT

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Sequences:

>Translated_319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI
>Mature_319_residues
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQ
MGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR
ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=314, Percent_Identity=85.6687898089172, Blast_Score=537, Evalue=1e-154,
Organism=Escherichia coli, GI87081766, Length=233, Percent_Identity=25.3218884120172, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786820, Length=71, Percent_Identity=45.0704225352113, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081684, Length=322, Percent_Identity=21.7391304347826, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37027; Mature: 37027

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCC
GLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELAAESPLMMIMFNSLSQQIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSRELLSLLPLAIDFEVLFSDLP
HHCCCCEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
WVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWALDDVLQEMGRKRHIALSLPGFEQ
EEEEECCCHHHHHHHCHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCH
SLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPLPFDAQQREKLMVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHHCCCEECCCCCCHHHHCCEECCEEEEEECCCCC
NPKIVWLRQAINTLCRRLI
CCCEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA