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The map label for this gene is torR [H]

Identifier: 16767109

GI number: 16767109

Start: 4024667

End: 4025359

Strand: Direct

Name: torR [H]

Synonym: STM3824

Alternate gene names: 16767109

Gene position: 4024667-4025359 (Clockwise)

Preceding gene: 16767095

Following gene: 16767111

Centisome position: 82.86

GC content: 55.84

Gene sequence:

>693_bases
ATGTCACATCACATTGTTATTGTTGAGGATGAACCTGTTACTCAGGCCAGATTACAGGCCTATTTTGAGCAGGAGGGGTA
TCGCGTTTCGGTGACCGACAGCGGCGCGGGCCTGCGTGACATCATGGAGCATGAGCACGTTTCGCTGATCCTGCTGGATA
TCAACCTCCCCGATGAAAACGGGTTGATGCTGACCAGGGCGCTACGCGAACGTTCCACGGTGGGCATTATTCTGGTGACG
GGGCGTTGCGACCAAATCGACCGCATCGTCGGGCTGGAGATGGGCGCGGACGACTACGTCACCAAGCCGCTGGAACTGCG
CGAGCTGGTAGTGCGGGTAAAAAATCTTTTGTGGCGTATCGATCTGGCCCGCCCCACGCCGCAAAATGCCAGTGAAAACT
GCTATATGTTTTCCGGCTACTGCCTGAACGTGATGAATCACACGCTGGAGCACAACGGTGAAGCCATTAAGCTTACGCGC
GCGGAGTACGAGCTACTGCTGGCCTTTGTGACCAACCCAGGCAAAGTGCTGCATCGCGAACGTCTGCTGCGAATGCTTTC
CGCCCGCCGCGTAGAGACTCCGGATCTCCGCACGATTGATGTCCTGGTTCGCCGCTTACGTCATAAAATTACGCCGGAAC
TGCTGGTCACACAGCATGGCGAAGGCTACTTTTTAGCCTCGGAGGTGTATTGA

Upstream 100 bases:

>100_bases
CGCAGATCTTATTCCGCAAATATGAACAGCGTCACTGGTCAGGATGAACGGGATACGGCAATATATGAACAGATATGAAC
AGAAAGAGACCGCGCGCAGG

Downstream 100 bases:

>100_bases
TACAGATAGACGGGCCGAAATCCCGGAGGCGATAGCGAACGGCGAACGCGCGCGCTGTCGGCGTTGTTATGCGTCAAAAT
AAGCACCGGCGGGCTGATAT

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDENGLMLTRALRERSTVGIILVT
GRCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTR
AEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQHGEGYFLASEVY

Sequences:

>Translated_230_residues
MSHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDENGLMLTRALRERSTVGIILVT
GRCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTR
AEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQHGEGYFLASEVY
>Mature_229_residues
SHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDENGLMLTRALRERSTVGIILVTG
RCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTRA
EYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQHGEGYFLASEVY

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=81.6593886462882, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=42.0600858369099, Blast_Score=188, Evalue=2e-49,
Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=31.7596566523605, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788394, Length=210, Percent_Identity=37.1428571428571, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1786599, Length=235, Percent_Identity=32.7659574468085, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1790860, Length=228, Percent_Identity=32.4561403508772, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=32.5892857142857, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=33.0396475770925, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082012, Length=229, Percent_Identity=30.5676855895196, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=30.3964757709251, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=29.8701298701299, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=30.2631578947368, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=29.2372881355932, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26384; Mature: 26253

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00139 THIOL_PROTEASE_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDEN
CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CEEHHHHHHHCCCEEEEEEECCCCHHHHHHEEECCCCHHHCCCHHHHHHHHHHHHHHEEE
DLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTRAEYELLLAFVTNPGKVLHRE
ECCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQHGEGYFLASEVY
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCC
>Mature Secondary Structure 
SHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEHEHVSLILLDINLPDEN
CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCEEEEEEEEECCCCC
GLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI
CEEHHHHHHHCCCEEEEEEECCCCHHHHHHEEECCCCHHHCCCHHHHHHHHHHHHHHEEE
DLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTRAEYELLLAFVTNPGKVLHRE
ECCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEHHHEEEEEEEECCCHHHHHHH
RLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQHGEGYFLASEVY
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]