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The map label for this gene is ugpQ [H]

Identifier: 16766839

GI number: 16766839

Start: 3722759

End: 3723499

Strand: Reverse

Name: ugpQ [H]

Synonym: STM3553

Alternate gene names: 16766839

Gene position: 3723499-3722759 (Counterclockwise)

Preceding gene: 16766840

Following gene: 16766837

Centisome position: 76.66

GC content: 58.7

Gene sequence:

>741_bases
ATGAGTAACTGGCCTTATCCCCACATTGTCGCCCATCGCGGCGGCGGTAAACTGGCGCCGGAAAACACTCTGGCGGCGAT
TGACGTGGGCGCGCGATACGGGCACACCATGATTGAGTTTGATGCCAAGCTGTCGAAAGACGGCGAAATTTTCCTGCTGC
ATGACGATAACCTGGAGCGCACCAGCAATGGTTGGGGCGTGGCGGGCGAGTTGAACTGGCAGGATTTATTGCGTGTGGAC
GCTGGCGGTTGGTTTAGCGGCGAATTTAAAGGCGAGCCGCTGCCGCTGCTCTCGCAGGTGGCGGAGCGCTGCCGTAAACA
CGGCATGATGGCAAATATTGAGATCAAACCGACAACGGGGAGCGGAAGGCTAACAGGACGCGTCGTGGCGTTGGCCGCCC
GCGAACTGTGGGCCGGGATGACGCCGCCGCTGCTTTCTTCCTTTGAGATAGAGGCGCTGGAAGCGGCGCAGGCGGCAGCA
CCTGAACTGCCGCGCGGGTTACTGCTGGATAAATGGCGTGAAGACTGGCGTGAACTGACGACCCGTCTGGGCTGTGTTTC
CCTCCATCTCAACCATAAATTACTCGATGAGACGCGAGTGCAAGAGATTAAAGCCGCGGGTCTGCGGATTCTGGTGTATA
CCGTCAATCAGCCCCAGCGGGCGGCAGAGCTGCTGCGCTGGGGCGTGGATTGTATCTGCACCGATCGCATTGATGACATC
GGCCCTCACTTTCAGTTTTAA

Upstream 100 bases:

>100_bases
GGTTGGCGCATCAGCAGCGCCCGGCGGCGGGCAGTACGCTATGGCTGCATCTGCCGGAACATCAGCGACATCTTTTTGAT
GGCGAAACAGGACAACGTGT

Downstream 100 bases:

>100_bases
GGGCCGTCAGTTTTAAGGGCTGATGGTTTTCAGCGGGATGTCAGGCTGCGGCGTCCCGCTGTCCTGCTGCAACATTGGCT
GGGAATGGTTTAGCATCCGG

Product: cytoplasmic glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVD
AGGWFSGEFKGEPLPLLSQVAERCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAA
PELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQPQRAAELLRWGVDCICTDRIDDI
GPHFQF

Sequences:

>Translated_246_residues
MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVD
AGGWFSGEFKGEPLPLLSQVAERCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAA
PELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQPQRAAELLRWGVDCICTDRIDDI
GPHFQF
>Mature_245_residues
SNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDA
GGWFSGEFKGEPLPLLSQVAERCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAAP
ELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQPQRAAELLRWGVDCICTDRIDDIG
PHFQF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=109, Percent_Identity=33.9449541284404, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI284055245, Length=89, Percent_Identity=41.5730337078652, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI284055240, Length=89, Percent_Identity=41.5730337078652, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI284055242, Length=89, Percent_Identity=41.5730337078652, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI21361649, Length=89, Percent_Identity=41.5730337078652, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1789858, Length=244, Percent_Identity=87.7049180327869, Blast_Score=448, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27382; Mature: 27250

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLER
CCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCEECCCCCEEEEECCCCCC
TSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAERCRKHGMMANIEIKPTTG
CCCCCCEEEECCHHHHEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
SGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAAPELPRGLLLDKWREDWRELT
CCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQPQRAAELLRWGVDCICTDRIDDI
HHHCEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHC
GPHFQF
CCCCCC
>Mature Secondary Structure 
SNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGEIFLLHDDNLER
CCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCEECCCCCEEEEECCCCCC
TSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAERCRKHGMMANIEIKPTTG
CCCCCCEEEECCHHHHEEECCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
SGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAAPELPRGLLLDKWREDWRELT
CCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQPQRAAELLRWGVDCICTDRIDDI
HHHCEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHC
GPHFQF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]