Click here to switch to the map view.

The map label for this gene is yrfF [H]

Identifier: 16766783

GI number: 16766783

Start: 3650187

End: 3652319

Strand: Direct

Name: yrfF [H]

Synonym: STM3495

Alternate gene names: 16766783

Gene position: 3650187-3652319 (Clockwise)

Preceding gene: 228960702

Following gene: 16766784

Centisome position: 75.15

GC content: 55.09

Gene sequence:

>2133_bases
ATGAGCACCATTCTGATTTTTATAGCTGCTTTGCTGGCCTGCTCTCTACTGGCAATATGGCGGTTCCGGGTAAAGTCCAG
ACGAGGGAGCTTACCGTGGATCAGCGCCTTTCAGGACGCGCAAACGCGTAAACTGTTGCCCGAAGAGCGCAGCGCGGTAG
AAAACTATCTCGATAACCTTAGCCAGATCCAGCAAGTTCCGGGGCCGACAGGCGCCAGTGCTGCGCCCATCTCGCTGACG
CTGAACGCGGAAAGCAACAGTGTCGTGATACTAACCCACTCCATCACCCGCTACGGCATTACCACTGACGATCCTAATAA
ATGGCGCTACTACCTCGACTCCGTCGAAGTCCATCTGCCGCCTTTCTGGGAACAGTACATCAATGATGAAAACAACGTTG
AGCTGATCCTCACGGATACGCTGCCGCTGGTGATCTCTTTAAACGGCCATACGCTGCAAGAGTATATGCAAGAGTCGCGC
GGCTACGCGCTACAGAATACCGCCTCTACGCAGGCGTCGATTCGCGGCGAAGAGAGCGAGCAGATTGAGCTGTTGAATAT
CCGTCAGGAGACCCACGAAGAATATGCGCTCAGCCGCCCGGCTGGCTTGCGCGAAGCGTTGTTAATCGTCGCCTCCTTTT
TGTTATTCTTTTTCTGCCTGATAACGCCAGACGTTTTTGTACCGTGGATGATAGGCGGCGCGATCCTGCTGCTGGCAGCC
GGACTTTGGGGGCTTTTTGCGCCGCCGTCGAAAAGCGCGCTGCGGGAAATTCACTGTCTGCGGGGAACGCCCCGCCGCTG
GGGACTGTTTGGGGAGAATAATCAGGAGCAGATTAACAATATTTCGCTGGGCATCATCGACCTTATTTACCCTGCCCACT
GGCAACCCTACATTACGCAGGATCTTGGGCAACAAACGGATATTGATATTTACCTTGATCGCCATGTCGCGCGCCAGGGC
CGGTTTTTATCCCTGCATGATGAAGTGAAAAACTTCCCGTTGCAGCACTGGTTACGCAGCACTGTTATTGCTATCGGTTC
GCTGCTGGTGTTGTTTATGCTGCTGTTCTGGATCCCGCTGGATATGCCAATCAAGTTCACGCTATCGTGGATGAAAGGCG
CGCAAACCATTGAAGCGACAACGGTAAAACAGCTTGAAAAAGCTGGCGTGCGGGTGGGCGATACGCTGCACCTGAGCGGT
AAAGGAATGTGTAATATTCATTCCGGCGCGACCTGGAGCGGCCAGTCTAACTCACCGTTTATGCCGTTCGATTGCTCGCA
AATCATCTGGAATGACGCGCCTGCGCTACCGCTGCCGGAATCAGACCTGGTGAATAAAGCGATGGCGCTAAGCCAGGCGG
TAAATCGTCAGCTCCATCCAAAACCCGAAGACGACTCGCGCGTAAGCGCATCTTTACGCTCCGCGATCCAAAAATCGGGC
ATGGTATTATTAGATGACTTTGGCGATATTGTTCTGAAAACCGCTGATTTGTGCGCGGCGGAAGACGAGTGCGTGCGTCT
GAAAAATGCGCTGGTTAATCTCGGTAACAGTAAGGACTGGAACGCGCTGGTGAAACGCGCGAACGCCGGCAAACTGGACG
GCGTCAACGTGCTGCTACGCCCCGTAAGCGCAGAGTCGCTGGAAAATCTGGTCACGACCTCAACGGCGCCGTTTATTTCT
CGCGAGACCGCGCGTGCCGCCCAGTCGCTGAATAGCCCCGCTCCCGGCGGATTCCTGATCGCCAGCGATGAAGGCAGCGA
ACTGGTTGATCAGACCTGGCCGTCAACGCCGCTGTATGACTATCCCGCGCAGGAACAGTGGAGCGCCTTCCAGCGTCTGG
CGCAAACGCTCATGCAGACGCCATTTAGCGCCGAGGGCATTGTCACCAGCGTGTATACCGATGCCAACGGCACGCAGCAT
ATCAGCCTGCATCGTATCCCCGATAAATCCGGCTGGTGGCGTTACCTCGGCACCACGCTGCTGATGCTGGCAATGATAGT
GAGCGCGGTCTACAACGGCATTCAGGCGTTCAGGCGTTATCAACGCCACCGTACCCGTATGGCGGACATCCAGGAATACT
ATGAAAGCTGCCTCAATCCCAGGTTAACCGTCTCTCCGGAAAATCTCATCTGA

Upstream 100 bases:

>100_bases
AAGTTCAACTCCACGCTTGCCGATAGCCAACCACAGAAAAATGTTTATTGGACAGGGTGCGACTGACCACGCCTGACAGA
CTTAGTAAGATGGGGAAAGC

Downstream 100 bases:

>100_bases
TAGCGCCGCCGTGCGACAGGGTATGCTACCCTGTCGCGCAAATTGCGTTACCCTGGAGTTCCCCATGCATATTGATATTG
ACTGGCAAAACGTGGATACC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 709

Protein sequence:

>710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Sequences:

>Translated_710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
>Mature_709_residues
STILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTL
NAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRG
YALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAAG
LWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGR
FLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGK
GMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSGM
VLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISR
ETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHI
SLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the igaA family [H]

Homologues:

Organism=Escherichia coli, GI1789801, Length=710, Percent_Identity=83.943661971831, Blast_Score=1184, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010771
- ProDom:   PD147088 [H]

Pfam domain/function: PF07095 IgaA [H]

EC number: NA

Molecular weight: Translated: 79363; Mature: 79231

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC
>Mature Secondary Structure 
STILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]