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The map label for this gene is yrdB [H]

Identifier: 16766689

GI number: 16766689

Start: 3573012

End: 3573269

Strand: Reverse

Name: yrdB [H]

Synonym: STM3400

Alternate gene names: 16766689

Gene position: 3573269-3573012 (Counterclockwise)

Preceding gene: 16766690

Following gene: 16766684

Centisome position: 73.56

GC content: 50.39

Gene sequence:

>258_bases
GTGAACCAGGCCATACAATTTCCTGACCGCGAAGAATGGGATACTGCCGCCAGTGCTATCATCTTTCCCGCCCTGGTTAA
TGGGATGCAACTCACGTGTGCAATAAAAAAAGATGTACTGGCGTATCGCTTTGGTGGAGAAACAGCGGAGCAATGGCTGG
CCATTTTTCGTGAGTATCGCTGGGACCTGGAAGAAGAGGCGGAAGCATTAATCCTGGCCCAGCAGGAAGATGATCACGGT
TGGATATGGTTATCCTGA

Upstream 100 bases:

>100_bases
GAATGCTGGTGGGGCAGGCTGCACATGCCGTTTTGCTTTGGCACGGTGTATTACCGCAGGTCGAGCCAGTGATTGAGCAG
CTACAGCAGGAATTATTAGC

Downstream 100 bases:

>100_bases
GAAAGATAGTCGTCTTTCCACTTTACATAGTTATTGGCGGAGTACTGCAGGCCCGATCTCTCAGCATCGCTCAAGGGGCG
GATCTGTTTTACCGGACTGC

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRFGGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHG
WIWLS

Sequences:

>Translated_85_residues
MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRFGGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHG
WIWLS
>Mature_85_residues
MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRFGGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHG
WIWLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789674, Length=84, Percent_Identity=72.6190476190476, Blast_Score=132, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009962 [H]

Pfam domain/function: PF07369 DUF1488 [H]

EC number: NA

Molecular weight: Translated: 9875; Mature: 9875

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRFGGETAEQWLAIFREYR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHCCEEEECCCCCHHHHHHHHHHHC
WDLEEEAEALILAQQEDDHGWIWLS
CCCCCCCCEEEEEECCCCCCEEEEC
>Mature Secondary Structure
MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRFGGETAEQWLAIFREYR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHCCEEEECCCCCHHHHHHHHHHHC
WDLEEEAEALILAQQEDDHGWIWLS
CCCCCCCCEEEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]