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The map label for this gene is dacB [H]

Identifier: 16766596

GI number: 16766596

Start: 3468654

End: 3470087

Strand: Direct

Name: dacB [H]

Synonym: STM3300

Alternate gene names: 16766596

Gene position: 3468654-3470087 (Clockwise)

Preceding gene: 39546366

Following gene: 16766600

Centisome position: 71.41

GC content: 54.95

Gene sequence:

>1434_bases
ATGCGATTTTCCAGATTTATCATCGGATTGACCACCAGTATAGCGTTCAGCGTTCAGGCCGCGAATATTGACGAATACAT
CAAACAGCTTCCGGCCGGCGCCAACCTCGCGCTGATGGTGCAAAAGATTGGCGCGCCCGCGCCGGCTATTGATTATCATA
GTCAGCAGATGGCGCTTCCCGCCAGTACCCAAAAGGTGATTACCGCGCTGGCGGCGCTGATTCAACTCGGCCCGGATTTC
CGTTTTACGACCACGCTGGAGACTAAAGGCAACGTCGATAACGGCATCCTGAAAGGTGACGTAATTGCGCGCTTCGGTGG
CGATCCAACGCTAAAACGTCAGGATATTCGCAATATGGTCGCGACGCTGAAAAAGTCCGGCGTCACGCAAATCGACGGCA
ATGTGCTTATCGACACGTCGATTTTCGCCAGCCACGATAAAGCGCCAGGCTGGCCGTGGAACGACCTGACGCAGTGTTTC
AGCGCGCCTCCCGCCGCCGCCATTGTTGACCGCAACTGTTTTTCTGTGTCGCTTTATAGCGCGCAAAAACCAAACGATTT
AGCCTTTATTCGCGTGGCCTCTTATTATCCGGTAACGATGTTCAGCCAGGTACGGACTCTACCGCGCGGTTCGGCAGACG
CGCAGTATTGCGAGCTGGATGTTGTGCCTGGCGATTTGAACCGTTATACGCTTACCGGCTGTTTACCACAGCGCGCCGAC
CCGCTGCCGCTGGCCTTTGCTATTCAGGACGGCGCCAGCTACGCGGGCGCGATCCTCAAGCAGGAACTGAAAGAGGCCGG
GATAACTTACCGCGGCACGCTGCTGCGCCAGACGCAGGTTAACGAGCCCGGAACGATCGTCGCCAGTAAACAGTCGGCGC
CACTGCACGATCTGCTTAAGATTATGCTGAAAAAGTCAGACAACATGATCGCCGATACTGTTTTTCGGATGATTGGTCAT
GTCAGGTTTAACGTGCCTGGCACCTGGCGGGCGGGATCGGATGCCGTTCGCCAGATCCTGCGCCAACAGGCGGGAATTGA
TATCGGCAATACCATTATTGCCGACGGTTCCGGTCTTTCTCGCCATAATCTGATCGCTCCCGCCACGATGATGCAGGTGC
TGCAATATATCGCCCAACACGATAACGAGCTGAACTTTATCTCTATGCTGCCGCTGGCGGGCTATGATGGTTCATTACAA
TACCGCGCCGGGCTGCATCAGGCGGGCGTAGACGGTAAGGTTTCAGCGAAAACCGGATCACTGCAGGGCGTGTATAATCT
GGCGGGCTTTATTACCACCGCAAGCGGGCAACGGATGGCATTTGTACAATATTTGTCCGGCTACGCGGTTCCACCTGCCG
ATCAGCGTAATCGCCGAATCCCGCTGGTACGCTTCGAGAGTCGGTTGTATAAGGATATTTATCAGAATAACTGA

Upstream 100 bases:

>100_bases
ATAACCATTTTACCCTGGAGTTCCCTATGGGTCATCGTTTACTTTTTAGGGCGTTGCGCCGTAGTATGACGGCTTGTTTC
CAGGGTGTTAGCGCGAGATT

Downstream 100 bases:

>100_bases
GTGCATTTATTGCCGGATGGCGGCGCTAACGCGTCTTATCTGGCCTACAAAGAACATAATAAAACGGGCCGCAAATGCGG
CCCGTTGGCTTTTGTAGGCC

Product: D-alanyl-D-alanine carboxypeptidase/endopeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIGAPAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVDNGILKGDVIARFGGDPTLKRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCELDVVPGDLNRYTLTGCLPQRAD
PLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLRQTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
VRFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVPPADQRNRRIPLVRFESRLYKDIYQNN

Sequences:

>Translated_477_residues
MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIGAPAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVDNGILKGDVIARFGGDPTLKRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCELDVVPGDLNRYTLTGCLPQRAD
PLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLRQTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
VRFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVPPADQRNRRIPLVRFESRLYKDIYQNN
>Mature_477_residues
MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIGAPAPAIDYHSQQMALPASTQKVITALAALIQLGPDF
RFTTTLETKGNVDNGILKGDVIARFGGDPTLKRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCELDVVPGDLNRYTLTGCLPQRAD
PLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLRQTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGH
VRFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAVPPADQRNRRIPLVRFESRLYKDIYQNN

Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S13 family [H]

Homologues:

Organism=Escherichia coli, GI1789573, Length=477, Percent_Identity=93.9203354297694, Blast_Score=937, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR000667 [H]

Pfam domain/function: PF02113 Peptidase_S13 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 51957; Mature: 51957

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIGAPAPAIDYHSQQMALP
CCCHHEEEEEEEEEEEEEEECCHHHHHHHCCCCCCCEEHHHHHCCCCCCCCCCCCCEECC
ASTQKVITALAALIQLGPDFRFTTTLETKGNVDNGILKGDVIARFGGDPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCEEEECCCCCCCCHHHHHHHH
ATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEEC
AQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCELDVVPGDLNRYTLTGCLPQRAD
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLRQTQVNEPGTIVASKQSAPLHDLLK
CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEECCCCCCHHHHHH
IMLKKSDNMIADTVFRMIGHVRFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQRMAFVQYLSGYAVPPADQRNRRIPLVRFESRLYKDIYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIGAPAPAIDYHSQQMALP
CCCHHEEEEEEEEEEEEEEECCHHHHHHHCCCCCCCEEHHHHHCCCCCCCCCCCCCEECC
ASTQKVITALAALIQLGPDFRFTTTLETKGNVDNGILKGDVIARFGGDPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCEEEECCCCCCCCHHHHHHHH
ATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHCCCEEECCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEEC
AQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCELDVVPGDLNRYTLTGCLPQRAD
CCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLRQTQVNEPGTIVASKQSAPLHDLLK
CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEECCCCCCHHHHHH
IMLKKSDNMIADTVFRMIGHVRFNVPGTWRAGSDAVRQILRQQAGIDIGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQRMAFVQYLSGYAVPPADQRNRRIPLVRFESRLYKDIYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2040429; 9278503; 2046551 [H]