Click here to switch to the map view.

The map label for this gene is yafK [H]

Identifier: 16766575

GI number: 16766575

Start: 3443318

End: 3444037

Strand: Reverse

Name: yafK [H]

Synonym: STM3277

Alternate gene names: 16766575

Gene position: 3444037-3443318 (Counterclockwise)

Preceding gene: 16766577

Following gene: 16766571

Centisome position: 70.9

GC content: 46.53

Gene sequence:

>720_bases
ATGGGGCGTAAAGGACTACTCGCTATTGTATTATTGAGCCTGTTTATCGCTTTTATTTTAAAATTTTTCTGGCTCACTCC
GTACGATGAAGACGTTTACCTGCCAGTGGAAAAACCTGTCGCATCGTCTTTAAAAATCATTCACCCCGGCGACCAGTTAT
TTATCCGCATTCTGAAAGCGGAAGATAAGCTGGAACTGTGGGCAAGCGCCAATAACAAGCCTTACAAACTCTACAAAACC
TGGACTATATGCGCATGGTCTGGTGGCTTAGGGCCAAAACATAAACAGGGAGACGGTAAAAGCCCGGAAGGCTTTTATGC
CACCAACAAAGGGTTGCTTAACCCAAACAGCCGCTATCATCTGGCATTTAATATTGGCTACCCGAATGCTTACGATCGGG
CAAATGGCTACACCGGTGATTTCATTATGGTTCACGGGAACTGCGTTTCGGCCGGTTGCTATGCCATGACCGATGCCGGT
ATTGAAGAGATTTATCAACTGGTGGCGCAGGCGCTAAACAGCGGGCAGAAGAGCGTGCCTGTCCATATCTTCCCATTTAC
GATGAATGACGAAAATATGCGCCAGGCGCAAGCATGGCCGGAATATAATTTCTGGCGTATGTTGAAGCCCGGCTATGATT
ACTTCGAAAAAAATCGCCGATTGCCAACCATCACCGTTGAAAATCGGCGTTATAAAATCAGCCCAACAACTCTTCCTTAA

Upstream 100 bases:

>100_bases
CGATTACTATTTTATAAAAGTACAGAACTGGACCTTTCCTCTATTTCATATCATAGGAAAATATATACTTGAACTGGTTC
AGAATAAGCGGAATACGAAA

Downstream 100 bases:

>100_bases
CATCCATCGCTAAATCAAACGAATGCAGGCGTGCCTGGTGGTCGAAAATCTGCCCGTTTACCATAATTTCATCCGCCTGG
GTCTCCCGCAGGATGGATTC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKT
WTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAG
IEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP

Sequences:

>Translated_239_residues
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKT
WTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAG
IEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
>Mature_238_residues
GRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTW
TICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGI
EEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=196, Percent_Identity=51.530612244898, Blast_Score=217, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27274; Mature: 27142

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCHHHEEEEECC
EDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYH
CCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEE
LAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVP
EEEECCCCCCCCCCCCCCCCEEEEECCEECCCEEEHHHCCHHHHHHHHHHHHHCCCCCCC
VHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
EEEEEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHCCCCCEEEECCCEEEECCCCCC
>Mature Secondary Structure 
GRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCHHHEEEEECC
EDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYH
CCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEE
LAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVP
EEEECCCCCCCCCCCCCCCCEEEEECCEECCCEEEHHHCCHHHHHHHHHHHHHCCCCCCC
VHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
EEEEEEEECCCHHHHHHCCCCCCEEEECCCCHHHHHHCCCCCEEEECCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]