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The map label for this gene is yraR [H]

Identifier: 16766566

GI number: 16766566

Start: 3436986

End: 3437654

Strand: Reverse

Name: yraR [H]

Synonym: STM3268

Alternate gene names: 16766566

Gene position: 3437654-3436986 (Counterclockwise)

Preceding gene: 16766568

Following gene: 16766561

Centisome position: 70.77

GC content: 57.4

Gene sequence:

>669_bases
GTGCAAGGTGGACAAATCTGTAAAGGAGCGAGGATGAGTCAGGTACTGATTACCGGCGCGACCGGACTGGTCGGCGGACA
TCTGCTGAGAATGTTAATCAACACGCCGCAGGTGAGCGCTATCGCCGCGCCGACGCGTCGCCCGCTGACGGATATTGTCG
GCGTTTATAACCCTCACGATCCGCAGCTTACCGATGCGTTAGCTCAGGTGACCGACCCGGTAGATATTGTTTTTTGCTGC
CTGGGCACGACCCGGCGTGAAGCGGGAAGTAAAGCGGCGTTTATTCATGCGGATTATACGCTGGTGGTTGATACTGCGCT
GACCGGACGTCGACTGGGTGCGCAGCACATGGTGGTGGTCAGCGCAATGGGAGCAAACGCGCACTCTCCGTTTTTCTACA
ATCGGGTGAAAGGAGAAATGGAGGAGGCGTTAATCGCGCAAAATTGGCCTCGTTTGACGATTGCCCGACCTTCTATGCTG
CTCGGCGACAGAACAACGCGGCGGGTGAATGAAACGCTTTTCGCTCCGCTATTCCGGCTGTTGCCAGGAAACTGGAAATC
GATCGATGCGCGGGATGTGGCGCGGGCCATGCTGGCGGAAGCGCTGGCGCCAGCACAAGAAGGCGTGACGATTCTGACCT
CATCGCAACTGCGGGAAAAAGCGGAGTAG

Upstream 100 bases:

>100_bases
CATGCGTTTCCTCCGCAGTGGTGGCGTCGGGTAAGGCAAATTTTCCACAATGATGGATACTTACCTCGTAGACTATTAAG
CCTGGTCGATAGGGCCGAGA

Downstream 100 bases:

>100_bases
CGAAGCCGGATGATTTACCGGATGGCGACGCGGTTTACACATTCTTATCGCCACCCGGCACACCGGTTACTTAATATACG
TAAAGGCGGTGGTCACGCGT

Product: nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCC
LGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSML
LGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE

Sequences:

>Translated_222_residues
MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCC
LGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSML
LGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE
>Mature_222_residues
MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCC
LGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSML
LGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728168, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728164, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728166, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=8e-22,
Organism=Escherichia coli, GI87082218, Length=211, Percent_Identity=87.6777251184834, Blast_Score=392, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI71983631, Length=218, Percent_Identity=31.1926605504587, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320840, Length=158, Percent_Identity=34.1772151898734, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 24028; Mature: 24028

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHD
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCC
PQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVV
CHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEEE
SAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRL
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHH
LPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE
CCCCCCCCCHHHHHHHHHHHHHCHHHCCEEEEECHHHHHHCC
>Mature Secondary Structure
MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHD
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCC
PQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVV
CHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEEE
SAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRL
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHH
LPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE
CCCCCCCCCHHHHHHHHHHHHHCHHHCCEEEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]