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The map label for this gene is yqjA [H]

Identifier: 16766525

GI number: 16766525

Start: 3395194

End: 3395856

Strand: Direct

Name: yqjA [H]

Synonym: STM3226

Alternate gene names: 16766525

Gene position: 3395194-3395856 (Clockwise)

Preceding gene: 16766524

Following gene: 16766526

Centisome position: 69.9

GC content: 52.34

Gene sequence:

>663_bases
ATGGAACTACTGACTCAATTGCTGAATGCCCTGTGGGCTCAGGACTTTGAAACACTGGCCAATCCTTCCATGATTGGCAT
GTTATATTTTGTGTTATTTATGATTTTGTTTCTGGAAAATGGGCTGCTCCCTGCCGCCTTTTTGCCTGGCGACAGCCTGT
TGATCCTGGTCGGCGTGCTGATCGCCAAAGGCGCGATGGGTTATCCACAAACCATTTTGCTGCTTACCGTCGCGGCCAGC
CTGGGTTGCTGGGTCAGCTATATTCAGGGCCGCTGGCTGGGGAATACCCGCACCGTGCAAAACTGGCTCTCTCATCTCCC
CGCACATTATCATCAACGCGCCCATCACCTTTTCCATAAACACGGCCTGTCGGCACTATTGATAGGCCGTTTTATCGCGT
TTGTCAGAACGCTGCTGCCCACCATTGCCGGCATATCCGGTCTGAATAACGCGCGCTTTCAGTTCTTCAACTGGATGAGC
GGCTTGTTGTGGGTGCTTATCCTGACGTCGCTGGGCTATCTGCTGGGCAAAACGCCCGTCTTTATGAAGTATGAAGATCA
GTTAATGTCATGCCTGATGCTGCTGCCCGTGGTGCTGCTCTTTTTTGGCCTGGCGGGTTCACTGGTCATGCTGTGGAAAA
AGAAGTATGGGAGCCGGGGATAA

Upstream 100 bases:

>100_bases
TTTGCCGTTTCCGCAACGCTGATAAAAACTCCAACTCTGTTGCGGCAGTGCAAACCTCAGATCACCGGCGTGACGTTAAC
CGATTCTCCAGGAATACTGA

Downstream 100 bases:

>100_bases
CTTATGCTTAAACCACGCATAACTGCCCGACAACTCATTTGGATCAGCGCTTTTCTACTGATGCTGACCATACTCATGAT
GACGTGGTCAACGCTGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG

Sequences:

>Translated_220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
>Mature_220_residues
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS
GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=220, Percent_Identity=95.4545454545455, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1789384, Length=216, Percent_Identity=62.962962962963, Blast_Score=271, Evalue=3e-74,
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=34.4155844155844, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24657; Mature: 24657

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLPAAFLPGDSLLILVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMSGLLWVLILTSLGYLLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGSRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]