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The map label for this gene is ygiD [H]

Identifier: 16766489

GI number: 16766489

Start: 3352157

End: 3352987

Strand: Reverse

Name: ygiD [H]

Synonym: STM3189

Alternate gene names: 16766489

Gene position: 3352987-3352157 (Counterclockwise)

Preceding gene: 16766495

Following gene: 16766485

Centisome position: 69.03

GC content: 55.48

Gene sequence:

>831_bases
ATGGTGATGTTAACAAAATGTCTTTCCAGTAAGGATAACATCATGTCTTTAACGTGTATGCCAGCATTGTTTTTGGGGCA
TGGCAGCCCGATGAACGTGCTGGACGATAACGATTATACCCGCGCCTGGCGGCGATTGGGGGAAGCCCTACCGCGACCAC
AGGCGATAGTGGTGGTGTCGGCGCACTGGTATACCCGTGGGACTGGCGTCACAGCGATGGAAAGGCCGCAAACTCTCCAT
GATTTTGGCGGTTTTCCGCAGGCGCTGTATGACACGCATTATCCGGCCCCTGGATCGCCTGCGCTGGCGCAGCGTCTGGT
TGAACTGTTGGCTCCCGTTCCCGTCGCGCTCGATAAAGAAGCGTGGGGATTTGATCACGGCTCCTGGGGCGTATTGATCA
AGATGTACCCGAATGCGGATATCCCGATGGTGCAGCTTAGTGTTGATAGTACCAAACCGGCGGCATGGCATTTTGAGGTG
GGTCGTAAGCTGGCGACGCTGCGTGACGAAGGCGTGATGCTGGTGGCCAGCGGGAATGTAGTTCATAATCTGCGGACTGT
GCGTTGGCACGGTGACAATATACCGTATCCCTGGGCGGCGTCATTTAATGACTTTGTGAAAGCCAATCTGACGTGGCAGG
GGCCGGTAGAACAGCACCCGCTGGTGAATTATCTGCAACATGAAGGGGGCGCCTTATCGAACCCGACGCCGGAGCACTTT
TTGCCTTTGCTGTATGTACTTGGCGCCTGGGACGGCAAGGAACCTATCACCATCCCGGTCGACGGTATTGAGATGGGCAG
TATAAGTATGTTGTCGGTGCAGGTGGGGTAG

Upstream 100 bases:

>100_bases
ATCCATTACTCCTTATCAATTTGCCGTCCGAACCTGACCTTCAAAATAACTGATGATCTTCATCATGGTTATCTGAGTTC
TTCCTCTGTGAAGAAAGCGT

Downstream 100 bases:

>100_bases
GCCGGATAAGGCGCTGAATGATTGCCCGATGGCGCTACGCGCATCGGGCTTACAGGAGAATCTATCCTTCGACAAAAATA
TGCGGATAGAAGCGGGAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEV
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG

Sequences:

>Translated_276_residues
MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEV
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
>Mature_276_residues
MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLH
DFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEV
GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=87.0229007633588, Blast_Score=485, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30427; Mature: 30427

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVS
CEEEEEHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKE
EEEEECCCCCCHHCCCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
AWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVMLVASGNV
CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHHHHHEEECCCCEEEEECCCE
VHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
HHHHHHHHCCCCCCCEEEEECCCEECCEEEEEEEEC
>Mature Secondary Structure
MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVS
CEEEEEHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKE
EEEEECCCCCCHHCCCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
AWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVMLVASGNV
CCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEHHHHHHHEEECCCCEEEEECCCE
VHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHF
EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHH
LPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG
HHHHHHHHCCCCCCCEEEEECCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]