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The map label for this gene is yqhC [H]

Identifier: 16766463

GI number: 16766463

Start: 3323045

End: 3323962

Strand: Reverse

Name: yqhC [H]

Synonym: STM3163

Alternate gene names: 16766463

Gene position: 3323962-3323045 (Counterclockwise)

Preceding gene: 16766468

Following gene: 16766460

Centisome position: 68.43

GC content: 51.09

Gene sequence:

>918_bases
ATGAAAAAATGGCGCGTTATGAATCGTGAAGCAATTTGCTTACAGTTGGCGGATAAAATTAATCATTTAAAAAATAATGA
TAAAATAATCAGCGAGCGGCTGGCGGGCATTCGTCTGTTGTATGGTGTTGAACCGGGGCCGCGCACGCCGGTCATGTATC
AGCCTGGCATCATATTTCTCTTTTCCGGCCATAAAATTGGCTATATTAACAAGCGCAAGTTTCGTTATGACGCTAATGAA
TATCTCTTACTGACCGTGCCGCTCCCTTTTGAATGCGAGACCTGGGCGACGCCGGAGGTACCGCTGGCCGGTATTCGGCT
CGATATTGATGTGCTGCAACTGCAAGAGTTGCTCATGGACATTGGCGAAGATGAGCGTTTCCAGTTGCCGATGGCGGCCA
GTGGGATTAACTCCGCCACGCTGTCGGACGAGATTTTATGTGCGGTGGAAAGATTGCTGGATGTGATGGAGCGCCCGCTG
GATGCGCGGATTCTGGGAAAACAGATTATTCGCGAAATTCTTTATCATGTGCTGATGGGGCCGCGCGGCGGGGCGCTGCT
TGCGCTGGTTAGTCGCCAGACGCACTTTAGCCTGATCAGTCGCGTACTTAAACAGATCGAAATGAAATACACCGAGAACC
TGAATGTTGAGCAACTGGCGGCAGAAGCGAACATGAGCGTGTCGGCGTTTCACCATAATTTTAAGGCGGTCACCAGCACC
TCGCCGTTGCAGTATTTAAAAAGCTACCGACTGCATAAAGCGCGGATGATGATGATTCACGACGGTATGAAGGCCAGCGC
CGCGGCGATGCGGGTCGGCTATGAGAGCGCATCGCAGTTTAGCCGGGAGTTTAAACGTTATTTTGGCGTTACGCCGGGCG
AAGATGTGGCAAGAATGCGGACAATGCAAGGGAGCTAA

Upstream 100 bases:

>100_bases
GGATGTCTCTCAATGCACATTTCTGCCAATGTTTTGCCTATTTCTCCAGAATGCTGGAGAAAATCGCTAAAAATGCGCAC
AATCCAGCGGAGTGGATTTG

Downstream 100 bases:

>100_bases
GTGGGGCATCCCGCCACGGGTCAACGAAGCGTAACCGGGCCATCCTGGCCGATTATGGATACGTCAGGCGTTACAGTATT
TCTTTTTAATCACCACGACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDANE
YLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPL
DARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTST
SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDVARMRTMQGS

Sequences:

>Translated_305_residues
MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDANE
YLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPL
DARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTST
SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDVARMRTMQGS
>Mature_305_residues
MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDANE
YLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPL
DARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTST
SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDVARMRTMQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=304, Percent_Identity=83.8815789473684, Blast_Score=524, Evalue=1e-150,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34720; Mature: 34720

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFL
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEEE
FSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMD
ECCCEEEEEECEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHH
IGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPLDARILGKQIIREILYHVLMG
CCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTST
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCHHEECCC
SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDVARMR
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHH
TMQGS
HCCCC
>Mature Secondary Structure
MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPRTPVMYQPGIIFL
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCEEECCCEEEE
FSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPLAGIRLDIDVLQLQELLMD
ECCCEEEEEECEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHH
IGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPLDARILGKQIIREILYHVLMG
CCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTST
CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCHHEECCC
SPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDVARMR
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHH
TMQGS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]