Click here to switch to the map view.

The map label for this gene is 16766431

Identifier: 16766431

GI number: 16766431

Start: 3290972

End: 3291457

Strand: Reverse

Name: 16766431

Synonym: STM3131

Alternate gene names: NA

Gene position: 3291457-3290972 (Counterclockwise)

Preceding gene: 16766432

Following gene: 16766430

Centisome position: 67.76

GC content: 50.62

Gene sequence:

>486_bases
ATGGATGCGATTTTTTTAAAGCTCGACAATATCAAAGGCGAAAGCCAGGTTGAAGGCTTTGAAGATCAGATAGAGATCAT
GTCTTATAGCCACAATGTGGCAATGCAGGTAAATAACGATGTTAGCCTCACTGAGCGGACTTCCGGGCGCGCGCATGTTG
GTGAAATGTCGCTCACCAAATTTGTCGACCTCGCCACGCCTGTGCTCAATGAGTACTGCTGTAGCGGGAGGCTAATTAGA
ACCGCGGTGCTGACGTTGTGCCGCAATGACGACGGCAAAATGCGGTCGCTTATCGTTTATACCCTGACAAACGTGCTGAT
ATCACAACTCAGTGTTAGCGGCGGCGCCGGCGGTAAGCCGGTGGAAACGATGTCGCTGAACTTCACGAAAATCGAATGGC
AAATCACTGCCGAGAAATCAGACGGCGCTCAGCAGGAGTCCAGAACGTCAGTATGGGATCTGGCGATGAACCAGATAGGG
AAATGA

Upstream 100 bases:

>100_bases
GTGTTTTTTGGTCGTTGCGCTTTTAATAAGAGTCACAAGCGCTGGCCGCCGGTATTCGTCTGGCTGCTGAACTGCCACCT
GATCAACAAGGAGATAAATC

Downstream 100 bases:

>100_bases
TGATGACACCAACCATTCCGGTCGCGCTATTCGACAGGCTCTTGGTTGAGGGGATAAGCCCACATGAATTGGTACGACGC
AAGTTAATGTGTTTATTCAA

Product: cytoplasmic protein

Products: NA

Alternate protein names: Hemolysin-Coregulated Protein; Type VI Secretion System Effector Hcp1 Family Protein; Hcp Family T6SS H; Hcp1 Family Type VI Secretion System Effector; Cytoplasmic Protein SciM; Type VI Secretion System Protein; Secretion System Protein Hemolysin-Coregulated Protein; SciM Protein

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIG
K

Sequences:

>Translated_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIG
K
>Mature_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIG
K

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17753; Mature: 17753

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHHEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHHEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA