Click here to switch to the map view.

The map label for this gene is ygfZ [H]

Identifier: 16766349

GI number: 16766349

Start: 3206918

End: 3207898

Strand: Direct

Name: ygfZ [H]

Synonym: STM3048

Alternate gene names: 16766349

Gene position: 3206918-3207898 (Clockwise)

Preceding gene: 16766346

Following gene: 16766352

Centisome position: 66.02

GC content: 57.08

Gene sequence:

>981_bases
ATGGCTTTTATCTCCTTTCCACCACGTCATCCTTCATCGTCAGCCCGCCTGCCGCTGACGCTGATCGCGCTTGACGACTG
GGCGCTGTCGACCATTACCGGCGTAGACAGTGAAAAGTATATTCAGGGCCAGGTCACCGCTGACGTAAGCCAGATGACTG
AACAGCAACACCTTCTCGCCGCCCACTGCGATGCTAAAGGTAAGATGTGGAGCACTCTGCGCCTGTTCCGTGAGCGCGAC
GGTTTCGCCTGGATTGAACGCCGTAGCGTGCTTGAAGCGCAATTAACGGAGCTGAAAAAGTACGCCGTATTTTCCAAAGT
GGTCATCGCGCCGGATGACGAACGCGTATTGCTTGGCGTGGCCGGTTTTCAGGCCCGCGCGGCGCTGGCTAATGTCTTTA
GCGAACTGCCCAATAGCGAAAATCAGGTGGTCAGAGACGGCGCCTCCACGCTGCTATGGTTTGAACATCCTGCGGAACGA
TTCCTGCTTGTCACCGATGTCGCGACGGCCAACATGTTAACGGAGAAGTTGCATGGCGAAGCCGAACTGAATAACAGCCA
ACAGTGGCTGGCGTTGGATATTGAAGCAGGCATTCCGGTGATTGACGCGGCGAACAGCGGTCAGTTTATCCCCCAGGCGA
CTAACCTACAGGCGCTGGGCGGCATCAGCTTCAAGAAAGGCTGCTACACCGGACAGGAGATGGTCGCACGGGCAAAATTC
CGCGGCGCCAATAAACGCGCGCTTTGGTTGCTGGCGGGCAAAGCCAGCCGGGTACCGGAAGCAGGAGAAGATCTGGAGCT
ACAGATGGGCGAGAACTGGCGTCGTACCGGCGCTATTCTGGCGGCGACGCAGTTGGACGATGGTCAGTTACTGGTTCAGG
CCGTCATGAATAACGATTTAGAAGCCGAAAGCGTCTTCCGCGTTCGCGACGATGCCAACACCCTGCATATCGTCCCGCTG
CCCTACTCGCTGGAAGAGTGA

Upstream 100 bases:

>100_bases
ACGATCAATCCGCTCTCAATGGGCTATTTAAAGCACTTGCAATGACCGATGGCTCTTTTACCATTAACCATTATTGTTGC
AGCTAACCAGGACATTATTT

Downstream 100 bases:

>100_bases
TATCACGTTAAAAGCCGGATAGCCTGATAGCGCAACGCCATCAGGCTCGCACGTGCTGTTCTCGTAGGCCGGATAAGGTG
CGACAGCGCCGCCATCCGGC

Product: global regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQVTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERD
GFAWIERRSVLEAQLTELKKYAVFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAER
FLLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWLLAGKASRVPEAGEDLELQMGENWRRTGAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPL
PYSLEE

Sequences:

>Translated_326_residues
MAFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQVTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERD
GFAWIERRSVLEAQLTELKKYAVFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAER
FLLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
RGANKRALWLLAGKASRVPEAGEDLELQMGENWRRTGAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPL
PYSLEE
>Mature_325_residues
AFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQVTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERDG
FAWIERRSVLEAQLTELKKYAVFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAERF
LLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKFR
GANKRALWLLAGKASRVPEAGEDLELQMGENWRRTGAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPLP
YSLEE

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=326, Percent_Identity=85.5828220858896, Blast_Score=578, Evalue=1e-166,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 35972; Mature: 35841

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQVTADVSQMTEQQHLLA
CCEECCCCCCCCCCCCCCEEEEEECCCHHHHEECCCCCCEEEEEEEHHHHHHHHHHHHHH
AHCDAKGKMWSTLRLFRERDGFAWIERRSVLEAQLTELKKYAVFSKVVIAPDDERVLLGV
EECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEE
AGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAERFLLVTDVATANMLTEKLHGE
CCHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEECCCCEEEEEECHHHHHHHHHHHCCC
AELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
CCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHH
RGANKRALWLLAGKASRVPEAGEDLELQMGENWRRTGAILAATQLDDGQLLVQAVMNNDL
CCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCC
EAESVFRVRDDANTLHIVPLPYSLEE
CHHHEEEEECCCCEEEEEECCCCCCC
>Mature Secondary Structure 
AFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQVTADVSQMTEQQHLLA
CEECCCCCCCCCCCCCCEEEEEECCCHHHHEECCCCCCEEEEEEEHHHHHHHHHHHHHH
AHCDAKGKMWSTLRLFRERDGFAWIERRSVLEAQLTELKKYAVFSKVVIAPDDERVLLGV
EECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEE
AGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAERFLLVTDVATANMLTEKLHGE
CCHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEECCCCEEEEEECHHHHHHHHHHHCCC
AELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARAKF
CCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHH
RGANKRALWLLAGKASRVPEAGEDLELQMGENWRRTGAILAATQLDDGQLLVQAVMNNDL
CCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCC
EAESVFRVRDDANTLHIVPLPYSLEE
CHHHEEEEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA