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The map label for this gene is xni [H]

Identifier: 16766277

GI number: 16766277

Start: 3123597

End: 3124412

Strand: Direct

Name: xni [H]

Synonym: STM2972

Alternate gene names: 16766277

Gene position: 3123597-3124412 (Clockwise)

Preceding gene: 16766276

Following gene: 16766280

Centisome position: 64.31

GC content: 55.27

Gene sequence:

>816_bases
ATGCTCGCCTCCCCCCGCCGTGAATGTTACCCTACGCGCAGGTTTGTAAGGGAGAACACCGTGGCTGCTCATCTGCTTAT
CGTCGACGCGCTCAATTTGATTCGCCGTATTCACGCCGTTCAGGGATCGCCCTGTGTGGAAACCTGCCAACACGCGCTCG
ATCAATTGATTATTCACAGCCAGCCAACCCATGCCGTAGCGGTATTTGATGACGACGCGCGCAGCAGCGGCTGGCGTCAT
CAGCGTTTGCCGGACTACAAAGCAGGACGTCCGCCGATGCCTGACGATTTACATAATGAAATGCCCGCCCTACGCGCCGC
ATTTGAACAGCGCGGCGTACGCTGTTGGGCATCAGACGGTAACGAAGCGGACGATCTGGCGGCGACGCTGGCGCTAAAAG
TTACCGAAGCCGGACACCAGGCAACCATTGTGTCAACCGATAAAGGCTATTGCCAGTTGCTCTCTCCGGGATTGCGCATT
CGCGACTACTTCCAGAAACGCTGGCTGGACGCGCCGTTTATTGAAAAAGAGTTTGGCGTACTTCCCCGGCAGTTGCCGGA
TTACTGGGGTCTGGCAGGAATCAGTAGTTCGAAAGTTCCCGGCGTTGCCGGTATCGGCCCCAAAAGCGCGACCCAGCTAT
TGATTCAGTTTCAAAATCTGGAGGGAATTTACGCCCATCTGGACGAGGTGCCGGAAAAGTGGCGCAAAAAGCTTGAGACG
CATAAAGAAATGGCATTTCTTTGCCGCGATATTGCACGTCTGCAAACCGATTTACATATCGACGGAAACTTACAGCAGCT
ACGGCTGGCGCGGTAG

Upstream 100 bases:

>100_bases
ATTTTAGGATCTGTAAGCCGGATAAGGCGCTCGCCGCCATCCGGCTTTTGTTGCCTGATGTCGCTTCGCTTATCAGGCCT
ACGGATAGCGCTATTTCGCA

Downstream 100 bases:

>100_bases
TTTTGTTGCCGGATGGCGGCGTGAACGCCTTATCCTGCCTACAGGACTGCACGAAATGTAGAGCGGATAAGCGCAGCGCC
ATCCGGCAAAATTACCAGGC

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLAR

Sequences:

>Translated_271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLAR
>Mature_271_residues
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRH
QRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI
RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKKLET
HKEMAFLCRDIARLQTDLHIDGNLQQLRLAR

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=251, Percent_Identity=89.6414342629482, Blast_Score=474, Evalue=1e-135,
Organism=Escherichia coli, GI1790294, Length=261, Percent_Identity=32.183908045977, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR002421
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 30583; Mature: 30583

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
NEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV
CCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCC
LPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKKLET
CCHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HKEMAFLCRDIARLQTDLHIDGNLQQLRLAR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIIHS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVRCWASDG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCC
NEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRIRDYFQKRWLDAPFIEKEFGV
CCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCC
LPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQNLEGIYAHLDEVPEKWRKKLET
CCHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HKEMAFLCRDIARLQTDLHIDGNLQQLRLAR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA