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The map label for this gene is intB [H]

Identifier: 16765956

GI number: 16765956

Start: 2775587

End: 2776816

Strand: Reverse

Name: intB [H]

Synonym: STM2636

Alternate gene names: 16765956

Gene position: 2776816-2775587 (Counterclockwise)

Preceding gene: 16765957

Following gene: 16765947

Centisome position: 57.17

GC content: 50.24

Gene sequence:

>1230_bases
ATGGCTATTTCAGATAGTTATCTAAAGTCGTGCCTCGGGCGCGAACGCGATAAAGTTGAGGAGAAGGCAGACCGGGACGG
TCTGTGGGTGCGCATTTCCAAAAAGGGCGCCGTCACTTTTTTCTACCGATTCCGTTTCCTGGGTAAGCAGGACAAGATGA
CGATCGGCAGTTACCCGGAATTCGGGTTGAAGGCCGCGCGCGAAGAGGTAACTAAGTGGGCCGCCATTCTTGCCCGGGGA
GAAAATCCGCGGATCAGGCAAAGCCTCGATAAAGCTAAAATCAACAGCCAGTACACATTCGAGGAACTTTTCAGAGAATG
GCATGCGATGGTATGCGTTCAGAAAGAAACATCCGATCAAATACTGCGTTCGTTTGAGCTGCATGTATTCCCTAAGCTGG
GTAAGTATCCGGCGCATCAGTTGACGCTGCACAACTGGCTTACAGTTCTGGACCGACTGGCGCAGGGATACACTGAGATC
ACCCGGCGAGTAATTAGTAACGGTCGGCAGTGCTACTCATGGGCAGTGAAGCGCCAGTTGCTTGAGGTTAACCCACTTTC
TGAAATGTCCGGTCGTGATTTTGGTATTCAGAAGAAAATGGGGGAGAGAACACTGGATCGCAAAGAAATTGCGATTGTCT
GGCGAGCTATTGAGGATTCCCGCCTTATTGAGCGAAACAAGATCCTTTATAAATTGTCCCTGATATGGGCGTGCAGGGTC
GGTGAACTCCGTCAGGCTGAAGTTTCGCATTTCGATTTTGAGGAGGGCGTCTGGACCGTACCGTGGGAAAATCATAAAAC
GGGACGGAAAAGTAAGAAGCCGATAATCCGCCCGATCATCCCTGAAATGCTCCCGCTGATACAACGAGCCATTGAGCTGG
CGCCAGGCCGTTTTGTTTTCTCAAAATATGCAGACAAGCCGATGAGCGAAGGCTTTCATATGAGCATCAGCAGCAACCTT
GTTAAGTTCATGCTGAAGGCTTATAACGAGCAGGTTCCGCACTTTACGATCCATGATCTACGCAGAACTGCGCGAACGAA
TTTCTCCGAGCTGACTGAACCACATATTGCTGAGATGATGCTCGGGCACAAACTGCCTGGAGTGTGGTCGGTGTACGACA
AATACACCTATATCGAAGAAATGAGAGAAGCTTATAGTAAATGGTGGGCCCGACTGATGAGCATCATCGAGCCCGATGTT
CTGGAGTTCACGCCACGTCAGACCGGATGA

Upstream 100 bases:

>100_bases
TACGACATCATGAGTCATGGTTTTTGTGTCCACCAGTGCGTCCATATCCTATGATGGACACAGAATCTTCCGTTCTGATG
GACACATGCAGGGATAAATC

Downstream 100 bases:

>100_bases
GTCGACCTTTGTTGTCACGGGGCAGATTCAGATGCGACATTGGACGGCGTGTTGGTCGTGACATTTCCCTGACCTGCCAC
TCATTGACTTTGGTTTTAAG

Product: integrase-like protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRFRFLGKQDKMTIGSYPEFGLKAAREEVTKWAAILARG
ENPRIRQSLDKAKINSQYTFEELFREWHAMVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEI
TRRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIEDSRLIERNKILYKLSLIWACRV
GELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPIIRPIIPEMLPLIQRAIELAPGRFVFSKYADKPMSEGFHMSISSNL
VKFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEMMLGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDV
LEFTPRQTG

Sequences:

>Translated_409_residues
MAISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRFRFLGKQDKMTIGSYPEFGLKAAREEVTKWAAILARG
ENPRIRQSLDKAKINSQYTFEELFREWHAMVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEI
TRRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIEDSRLIERNKILYKLSLIWACRV
GELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPIIRPIIPEMLPLIQRAIELAPGRFVFSKYADKPMSEGFHMSISSNL
VKFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEMMLGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDV
LEFTPRQTG
>Mature_408_residues
AISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRFRFLGKQDKMTIGSYPEFGLKAAREEVTKWAAILARGE
NPRIRQSLDKAKINSQYTFEELFREWHAMVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEIT
RRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIEDSRLIERNKILYKLSLIWACRVG
ELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPIIRPIIPEMLPLIQRAIELAPGRFVFSKYADKPMSEGFHMSISSNLV
KFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEMMLGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDVL
EFTPRQTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=389, Percent_Identity=24.1645244215938, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788974, Length=415, Percent_Identity=22.8915662650602, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48059; Mature: 47928

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRFRFLGKQDKMTIGSYPE
CCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCC
FGLKAAREEVTKWAAILARGENPRIRQSLDKAKINSQYTFEELFREWHAMVCVQKETSDQ
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCHHHH
ILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEITRRVISNGRQCYSWAVKRQL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIEDSRLIERNKILYKLSLIWACRV
HHCCCCHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPIIRPIIPEMLPLIQRAIELAPGRFVF
CCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
SKYADKPMSEGFHMSISSNLVKFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEMM
HHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHH
LGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDVLEFTPRQTG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure 
AISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRFRFLGKQDKMTIGSYPE
CCCHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEECCCCC
FGLKAAREEVTKWAAILARGENPRIRQSLDKAKINSQYTFEELFREWHAMVCVQKETSDQ
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCHHHH
ILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEITRRVISNGRQCYSWAVKRQL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIEDSRLIERNKILYKLSLIWACRV
HHCCCCHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPIIRPIIPEMLPLIQRAIELAPGRFVF
CCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
SKYADKPMSEGFHMSISSNLVKFMLKAYNEQVPHFTIHDLRRTARTNFSELTEPHIAEMM
HHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHH
LGHKLPGVWSVYDKYTYIEEMREAYSKWWARLMSIIEPDVLEFTPRQTG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]