Click here to switch to the map view.

The map label for this gene is arnF [H]

Identifier: 16765630

GI number: 16765630

Start: 2410946

End: 2411323

Strand: Direct

Name: arnF [H]

Synonym: STM2303

Alternate gene names: 16765630

Gene position: 2410946-2411323 (Clockwise)

Preceding gene: 16765629

Following gene: 16765640

Centisome position: 49.63

GC content: 54.23

Gene sequence:

>378_bases
ATGGGCGTAATGTGGGGACTGATAAGCGTTGCGATTGCCTCCCTCGCCCAGTTGAGTTTAGGATTCGCCATGATGCGACT
GCCATCGATAGCGCATCCACTGGCGTTTATTTCCGGGCTGGGCGCATTTAATGCCGCGACCCTGGCGCTATTCGCCGGTT
TGGCGGGGTATCTGGTTTCCGTCTTCTGCTGGCAGAAAACATTACACACGCTCGCGCTCAGCAAAGCCTATGCGCTACTG
AGTCTCAGCTATGTGCTTGTCTGGGTAGCCTCAATGCTGTTACCCGGTTTGCAAGGCGCTTTCAGCCTAAAAGCGATGCT
CGGCGTATTGTGTATTATGGCGGGGGTAATGCTGATTTTTCTGCCCGCCAGATCATGA

Upstream 100 bases:

>100_bases
TGGCGGCCTGGAAAATCTGGCATGAACAGGTTCCGCCCCGCCACTGGTTGGGCGTCGCATTGATTATCAGCGGCATTATC
ATTCTGGGGAGTGCGGCATA

Downstream 100 bases:

>100_bases
TGGCTTGCGCGTCAACCGCTGCCATTCGTCGCAGGAATAACAGCGTGCATCAACGATTTTTAAGGTCTGGTGTTTTTCCC
GATTAATACAATACTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: L-Ara4N-phosphoundecaprenol flippase subunit ArnF; Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF [H]

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFNAATLALFAGLAGYLVSVFCWQKTLHTLALSKAYALL
SLSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIFLPARS

Sequences:

>Translated_125_residues
MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFNAATLALFAGLAGYLVSVFCWQKTLHTLALSKAYALL
SLSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIFLPARS
>Mature_124_residues
GVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFNAATLALFAGLAGYLVSVFCWQKTLHTLALSKAYALLS
LSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIFLPARS

Specific function: Translocates 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane [H]

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ArnF family [H]

Homologues:

Organism=Escherichia coli, GI87082075, Length=125, Percent_Identity=67.2, Blast_Score=144, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022832 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13121; Mature: 12990

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFNAATLALFAGLAGYLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
VFCWQKTLHTLALSKAYALLSLSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LPARS
HCCCC
>Mature Secondary Structure 
GVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFNAATLALFAGLAGYLVS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
VFCWQKTLHTLALSKAYALLSLSYVLVWVASMLLPGLQGAFSLKAMLGVLCIMAGVMLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LPARS
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA