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The map label for this gene is quuD [H]

Identifier: 16765567

GI number: 16765567

Start: 2339184

End: 2339552

Strand: Reverse

Name: quuD [H]

Synonym: STM2239

Alternate gene names: 16765567

Gene position: 2339552-2339184 (Counterclockwise)

Preceding gene: 16765568

Following gene: 16765565

Centisome position: 48.16

GC content: 44.17

Gene sequence:

>369_bases
TTGATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGGGCATGGGCGGCGAGTGATAGCTCAGGAGTGGACTATTCGCC
TATAGCTGCTGGGTTTAAAGGGCTTCTTCCCTATACCTGCAAGACACGTGTGGCTTGTTCTGATAATGACGCATTAATTG
TTGAGGGGTGTCTTGCTCGTTTAAAGCAAAAAAGGCCTGATGAGCATTCGCTTCTTGTGGCACATTATTTATACAGAATA
TCCAAGCGTAAGATTGCAAAGGTGCGTGGGAAGGATGAGAAATTGGTACGTATAGAAATACAGTTAGCCGAAGGATTTAT
TGATGGCTGCCTTTCAATGCTGGATCTAACATTAGATATGGACGTTTAA

Upstream 100 bases:

>100_bases
TGGCATTCGAAGAGAAATACGGCTCTCAACTGGAGTTGATATTTCGTTTTATCGATCGCGCGCTGGCAATTGGCGTGCTG
GCCTGATTTGGTGGAGAAAG

Downstream 100 bases:

>100_bases
TAATACGCCCCATGCAGGGGCGTATTATTTACTGGATGAATGACATTTGATTAATATATTTTATCATTAACTCTCTGGGA
GTAGTGCTCCAAAATTTTAG

Product: phage antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRVACSDNDALIVEGCLARLKQKRPDEHSLLVAHYLYRI
SKRKIAKVRGKDEKLVRIEIQLAEGFIDGCLSMLDLTLDMDV

Sequences:

>Translated_122_residues
MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRVACSDNDALIVEGCLARLKQKRPDEHSLLVAHYLYRI
SKRKIAKVRGKDEKLVRIEIQLAEGFIDGCLSMLDLTLDMDV
>Mature_122_residues
MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRVACSDNDALIVEGCLARLKQKRPDEHSLLVAHYLYRI
SKRKIAKVRGKDEKLVRIEIQLAEGFIDGCLSMLDLTLDMDV

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=121, Percent_Identity=47.9338842975207, Blast_Score=116, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 13704; Mature: 13704

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRVACSDNDALIVEGCLAR
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCEEHHHHHHHH
LKQKRPDEHSLLVAHYLYRISKRKIAKVRGKDEKLVRIEIQLAEGFIDGCLSMLDLTLDM
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCC
DV
CC
>Mature Secondary Structure
MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRVACSDNDALIVEGCLAR
CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCEEHHHHHHHH
LKQKRPDEHSLLVAHYLYRISKRKIAKVRGKDEKLVRIEIQLAEGFIDGCLSMLDLTLDM
HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCC
DV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]