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The map label for this gene is yohD [H]

Identifier: 16765500

GI number: 16765500

Start: 2267357

End: 2267953

Strand: Direct

Name: yohD [H]

Synonym: STM2170

Alternate gene names: 16765500

Gene position: 2267357-2267953 (Clockwise)

Preceding gene: 16765497

Following gene: 16765510

Centisome position: 46.68

GC content: 57.96

Gene sequence:

>597_bases
ATGCTTAATGCCGGAGGTGGTTTACGCATGGATATCAACACGCTTATTACGCATTATGGCTATGCGGCGCTGGTTATCGG
CAGTATGGCCGAAGGTGAAACCGTTACCCTGTTGGGGGGCGTCGCGGCGCATCAGGGATTGCTCAAGTTTCCGCTGGTGG
CGGCGGCTGTCGCGCTGGGAGGGATGATGGGCGATCAGCTACTTTATCTGTTAGGACGATGCTATGGCGGGAAGATCCTG
CGTCGTTTCCCCCGTTATCATACGAAGATTCGTCGCGCGCAGAAAATGATCCAACGCCATCCGTATCTGTTTGTGATCGG
CACGCGTTTTATGTACGGCTTCCGGGTGGTTGGCCCGCTGCTGATTGGCGCCAGCCGCCTGCCGCCTAAAATTTTTCTGC
CGCTGAATATTGTAGGCGCGCTGATCTGGGCGCTGCTGTTTACCACGCTGGGATATCTTGGCGGCGAGGTGATCGCGCCA
TGGCTGCACGACCTCGATCAGCATCTCAGGCACGGGGTCTGGCTGATTCTGGCCATCGTCCTGGTGGTGGGCGTGCGCTG
GTGGCTGAAAAGACGCGGCAAAGCGGAGGCCCGTTAA

Upstream 100 bases:

>100_bases
ATGTTCAAGTATAATTCAGTTTCTGGTTATTTTATGAACAATGGCAAAATAGTCTCCGGCAAAACGTCGGCTTTGCCGCG
CACGCCTCTTGCCAGGGTGT

Downstream 100 bases:

>100_bases
ACCCGATGGTATCCGGATGGCATAACGCCGCCATCCGGCACCCGGCGTTTATTTTGCGTTGAATTGCGGATTCGCCAGCA
TAAACCCGCCGTCGACAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLVAAAVALGGMMGDQLLYLLGRCYGGKIL
RRFPRYHTKIRRAQKMIQRHPYLFVIGTRFMYGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAP
WLHDLDQHLRHGVWLILAIVLVVGVRWWLKRRGKAEAR

Sequences:

>Translated_198_residues
MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLVAAAVALGGMMGDQLLYLLGRCYGGKIL
RRFPRYHTKIRRAQKMIQRHPYLFVIGTRFMYGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAP
WLHDLDQHLRHGVWLILAIVLVVGVRWWLKRRGKAEAR
>Mature_198_residues
MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLVAAAVALGGMMGDQLLYLLGRCYGGKIL
RRFPRYHTKIRRAQKMIQRHPYLFVIGTRFMYGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAP
WLHDLDQHLRHGVWLILAIVLVVGVRWWLKRRGKAEAR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=187, Percent_Identity=80.2139037433155, Blast_Score=278, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 21951; Mature: 21951

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLVAAAVALG
CCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
GMMGDQLLYLLGRCYGGKILRRFPRYHTKIRRAQKMIQRHPYLFVIGTRFMYGFRVVGPL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHH
LIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAPWLHDLDQHLRHGVWLILAIV
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVGVRWWLKRRGKAEAR
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAHQGLLKFPLVAAAVALG
CCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
GMMGDQLLYLLGRCYGGKILRRFPRYHTKIRRAQKMIQRHPYLFVIGTRFMYGFRVVGPL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHH
LIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAPWLHDLDQHLRHGVWLILAIV
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVGVRWWLKRRGKAEAR
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]