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The map label for this gene is fliD

Identifier: 16765298

GI number: 16765298

Start: 2049402

End: 2050805

Strand: Direct

Name: fliD

Synonym: STM1960

Alternate gene names: 16765298

Gene position: 2049402-2050805 (Clockwise)

Preceding gene: 16765287

Following gene: 16765299

Centisome position: 42.19

GC content: 49.36

Gene sequence:

>1404_bases
ATGGCTTCAATTTCATCATTAGGTGTGGGATCAAACTTACCGTTAGACCAGTTGTTGACAGACCTGACAAAGAACGAAAA
AGGACGCTTAACGCCAATTACCAAACAGCAGAGCGCGAATTCGGCAAAGCTAACCGCCTATGGCACATTGAAAAGCGCAT
TAGAAAAATTCCAGACGGCAAATACCGCGTTAAATAAAGCGGATTTATTTAAGTCTACCGTGGCGTCCAGCACCACTGAA
GATCTCAAAGTCAGTACTACCGCTGGCGCTGCCGCAGGGACTTATAAGATTAACGTAACCCAGCTTGCCGCCGCACAGTC
GCTGGCGACAAAAACCACCTTCGCGACCACCAAAGAGCAGTTGGGCGATACGTCGGTCACGTCCCGGACAATTAAAATTG
AACAGCCGGGACGTAAAGAGCCGCTGGAAATTAAGCTGGATAAAGGCGACACCTCCATGGAGGCGATCCGTGACGCCATC
AATGACGCCGACAGCGGTATCGCCGCCAGTATCGTTAAGGTCAAAGAGAACGAATTCCAGTTGGTGCTTACCGCCAATAG
CGGTACCGACAATACGATGAAGATCACGGTGGAAGGCGATACAAAACTTAACGATCTACTCGCTTATGACAGCACCACCA
ATACCGGCAATATGCAAGAGCTGGTGAAAGCAGAAAACGCGAAGCTGAACGTAAACGGCATCGACATTGAGCGTCAGAGC
AATACCGTAACCGACGCCCCTCAGGGAATTACGCTCACCCTGACCAAGAAAGTGACCGACGCGACCGTGACGGTAACGAA
AGATGATACCAAGGCGAAAGAGGCGATTAAATCCTGGGTGGATGCCTATAACTCGCTGGTGGATACCTTTAGCTCGTTAA
CCAAATATACCGCCGTTGAGCCGGGCGAAGAAGCCAGCGATAAAAACGGCGCGCTGTTAGGCGATAGTGTGGTTCGTACT
ATCCAGACCGGGATTCGGGCACAATTTGCCAATAGCGGCAGTAATTCTGCGTTCAAAACAATGGCGGAAATTGGCATCAC
CCAGGATGGGACTTCCGGCAAACTGAAGATTGATGATGATAAGCTGACCAAAGTACTGAAAGATAACACAGCCGCAGCGC
GTGAGCTGCTGGTAGGCGATGGTAAAGAAACGGGTATCACCACCAAAATTGCCACCGAAGTGAAAAGTTATCTGGCGGAT
GACGGCATTATTGATAATGCGCAGGACAACGTTAACGCCACGCTGAAAAGCCTGACAAAACAGTACCTGTCCGTTAGCAA
CAGCATCGATGAAACCGTTGCCCGTTACAAGGCCCAGTTTACCCAACTGGATACCATGATGAGTAAGCTGAATAACACCA
GTAGTTATTTGACCCAGCAATTTACAGCTATGAACAAGTCCTGA

Upstream 100 bases:

>100_bases
ATTATTCCGCGCATTATTTTTGCAAAATTATCATTAAACTTTGCCTCCAGATTGCCGATAACGCGCTTAACTACTGTTTG
CAATCAAAAAGGAAGAAGGC

Downstream 100 bases:

>100_bases
TAACAGAGGTCACCATGTACACCGCGAGCGGTATCAAAGCTTATGCGCAAGTCAGCGTGGAAAGCGCCGTGATGAGCGCC
AGCCCGCATCAGTTGATTGA

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTANTALNKADLFKSTVASSTTE
DLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAI
NDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQS
NTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRT
IQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLAD
DGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS

Sequences:

>Translated_467_residues
MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTANTALNKADLFKSTVASSTTE
DLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAI
NDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQS
NTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRT
IQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLAD
DGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS
>Mature_466_residues
ASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTANTALNKADLFKSTVASSTTED
LKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAIN
DADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSN
TVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTI
QTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLADD
GIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family

Homologues:

Organism=Escherichia coli, GI1788233, Length=464, Percent_Identity=51.5086206896552, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLID_SALTY (P16328)

Other databases:

- EMBL:   X51740
- EMBL:   AE006468
- EMBL:   M85241
- PIR:   S10364
- RefSeq:   NP_460913.1
- PRIDE:   P16328
- GeneID:   1253481
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1960
- NMPDR:   fig|99287.1.peg.1894
- HOGENOM:   HBG752486
- OMA:   MISERVT
- ProtClustDB:   PRK08032
- BioCyc:   STYP99287:STM1960-MONOMER
- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N

EC number: NA

Molecular weight: Translated: 49835; Mature: 49704

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
NTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQ
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
LGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQ
HCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCEE
LVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQS
EEEEECCCCCCEEEEEEECCCCHHHHEEECCCCCCCCHHHHHHHCCCEEEECEEEEECCC
NTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVE
CCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGEEASDKNGALLGDSVVRTIQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDD
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECHH
KLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLADDGIIDNAQDNVNATLKSLTK
HHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKLTAYGTLKSALEKFQTA
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
NTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQ
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
LGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQ
HCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCEE
LVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQS
EEEEECCCCCCEEEEEEECCCCHHHHEEECCCCCCCCHHHHHHHCCCEEEECEEEEECCC
NTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAIKSWVDAYNSLVDTFSSLTKYTAVE
CCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PGEEASDKNGALLGDSVVRTIQTGIRAQFANSGSNSAFKTMAEIGITQDGTSGKLKIDDD
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECHH
KLTKVLKDNTAAARELLVGDGKETGITTKIATEVKSYLADDGIIDNAQDNVNATLKSLTK
HHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QYLSVSNSIDETVARYKAQFTQLDTMMSKLNNTSSYLTQQFTAMNKS
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2193164; 11677609; 1527488; 9878359; 11118149