Click here to switch to the map view.

The map label for this gene is yedO [H]

Identifier: 16765291

GI number: 16765291

Start: 2042050

End: 2043036

Strand: Reverse

Name: yedO [H]

Synonym: STM1953

Alternate gene names: 16765291

Gene position: 2043036-2042050 (Counterclockwise)

Preceding gene: 16765292

Following gene: 16765290

Centisome position: 42.06

GC content: 57.65

Gene sequence:

>987_bases
ATGCCACTACATCACTTAACGCGCTTCCCTCGCCTGGAGTTTATCGGCGCGCCGACCCCGCTCGAATACCTGCCGCGATT
GTCTGATTATCTTGGCCGTGAGATTTACATTAAGCGCGATGACGTTACGCCCATTGCAATGGGCGGCAATAAACTGCGCA
AGCTGGAGTTTTTGGTGGCCGACGCGCTGCGAGAAGGGGCGGATACGCTGATAACCGCAGGGGCGATTCAGTCGAACCAT
GTCCGTCAGACGGCGGCAGTCGCGGCCAAATTGGGACTGCATTGCGTCGCCTTGCTGGAAAATCCAATCGGTACCACCGC
GGAAAATTACCTGACGAATGGTAATCGCCTGTTACTGGATTTATTTAATACGCAAATTGAGATGTGCGATGCGCTAACCG
ATCCGGATGCGCAGCTGCAAACGCTGGCGACGCGCATTGAAGCGCAAGGGTTCAGGCCCTATGTGATTCCGGTCGGCGGT
TCCAGCGCGCTGGGGGCAATGGGATACGTAGAGAGCGCCCTGGAAATCGCCCAGCAGTGTGAAGAGGTCGTCGGGCTCTC
TTCGGTGGTGGTGGCCTCCGGCAGCGCCGGAACGCACGCCGGGTTAGCTGTCGGGCTGGAACATCTGATGCCGGATGTCG
AACTGATTGGCGTGACCGTTTCACGTTCTGTCGCCGAGCAGAAACCCAAAGTGATTGCCTTGCAGCAGGCTATTGCCGGT
CAGCTGGCGCTGACGGCGACGGCGGATATCCATTTATGGGATGACTATTTTGCCCCGGGTTACGGCGTGCCAAATGACGC
GGGGATGGAGGCGGTGAAACTGCTGGCGAGCCTGGAGGGGGTGCTGCTGGATCCGGTATATACCGGTAAAGCGATGGCGG
GTCTGATAGACGGCATCAGCCAGAAACGCTTTAACGATGACGGGCCGATTCTCTTTATTCACACCGGTGGGGCGCCTGCG
CTGTTTGCCTACCATCCTCATGTATAA

Upstream 100 bases:

>100_bases
TATGTCAGCAAACGGAGGCGCGTGAATCGGCGCCTTTTTTATTTCCGTTAGATCAACGTGCATAATAAAAAGAACACACC
ACAACGTTACCGGAGGCTCA

Downstream 100 bases:

>100_bases
CCTCCAGGTAATCAACGCGAATGCAAGAAAGTATCCAACTGGTTATTGAATCGCTGCCGTATTTGCTTAAAGGCGCCGTC
TTTACCCTGCAACTGAGTAT

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MPLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNH
VRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGG
SSALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAG
QLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPA
LFAYHPHV

Sequences:

>Translated_328_residues
MPLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNH
VRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGG
SSALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAG
QLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPA
LFAYHPHV
>Mature_327_residues
PLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHV
RQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGS
SALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQ
LALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPAL
FAYHPHV

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=328, Percent_Identity=90.2439024390244, Blast_Score=609, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 34912; Mature: 34780

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVA
CCCHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEECCCHHHHHHHHHH
DALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLD
HHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEE
LFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
EEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAG
HHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCEEEHHHHHHC
QLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGIS
CEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
QKRFNDDGPILFIHTGGAPALFAYHPHV
HHCCCCCCCEEEEECCCCCEEEEECCCC
>Mature Secondary Structure 
PLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVA
CCHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEECCCHHHHHHHHHH
DALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLD
HHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEE
LFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
EEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAG
HHHHCCHHEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCEEEHHHHHHC
QLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGIS
CEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHH
QKRFNDDGPILFIHTGGAPALFAYHPHV
HHCCCCCCCEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA