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The map label for this gene is araH [H]

Identifier: 16765272

GI number: 16765272

Start: 2026132

End: 2026689

Strand: Reverse

Name: araH [H]

Synonym: STM1931

Alternate gene names: 16765272

Gene position: 2026689-2026132 (Counterclockwise)

Preceding gene: 16765274

Following gene: 16765271

Centisome position: 41.72

GC content: 54.66

Gene sequence:

>558_bases
ATGAAAAAGGTCGCGGTGCTGTTGGCACCAGGATTTGAAGAAGCAGAGGCCATTGTTACTCTTGATATTCTGCGACGTTT
GCATATCGACGTCGAAACGCTGGCGTGTGCTGAATCACGGGCGGTGGTGAGTTACCATGATATTCCTATGGTTGCGGACA
GCACGCTGAGTGAACGCCAGCAGGCGCTTTTCGATGCGGTAGTGCTACCGGGCGGTCCGCAGGGGAGCGCTAATCTGGCG
GCTAATCCGGCGGTGATCGCTTTCGTTGCGCGTCATGATGCGGCAGGCAAATTAATTTGTCCTATCTGTTCCGCGGCGGC
AAGGGTGCTGGGTGCTCACGGATTGCTGAAGGGGCGTCGTTATGTCTGTTCCGGCGATCTGTGGAAAGCGGTTCCGGAAG
GTGTCTATGTGGATGCGCCCGTGGTTGAAGATGGTAATTTAATTAGCGGCAAAGGGTTGGGTCATGTCTTTGATTTCGCG
CTAACCCTTTCCGCCAGACTGCTGGGAGACGATGCGCCGGTTCGCGAACAGGCTGAACATATCTATTATCCCTGGTAA

Upstream 100 bases:

>100_bases
CCGATTTTGCGGTAGATCATTTTTAATATCATTAATCATACGAGCACGTTATTCGGTTGAGCGCAGTTTTGCTGGGTGAC
TCGTTAACAAGGAGCAGTCA

Downstream 100 bases:

>100_bases
TCGTTATTCACCCAGGGCCGTAAGGATTAGCTGGCTGATGTTATGGATTAATGTGCTGGCTTTCCTGCCTTTTGGCTGAT
GAATTCGCTCTGGGTTATGT

Product: intracellular protease/amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVSYHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLA
ANPAVIAFVARHDAAGKLICPICSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA
LTLSARLLGDDAPVREQAEHIYYPW

Sequences:

>Translated_185_residues
MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVSYHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLA
ANPAVIAFVARHDAAGKLICPICSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA
LTLSARLLGDDAPVREQAEHIYYPW
>Mature_185_residues
MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVSYHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLA
ANPAVIAFVARHDAAGKLICPICSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA
LTLSARLLGDDAPVREQAEHIYYPW

Specific function: Involved in biogenesis of ribosomal proteins, probably as a ribosomal protein-folding chaperone. Interacts with ribosomal subunits, ribosomes and polysomes. Confers resistance to oxidative stress [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

Organism=Homo sapiens, GI183227678, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI31543380, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081736, Length=180, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17558714, Length=174, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531319, Length=168, Percent_Identity=32.1428571428571, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571932, Length=186, Percent_Identity=34.9462365591398, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24653499, Length=187, Percent_Identity=33.6898395721925, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006287
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 19681; Mature: 19681

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVSYHDIPMVADSTLSERQ
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
QALFDAVVLPGGPQGSANLAANPAVIAFVARHDAAGKLICPICSAAARVLGAHGLLKGRR
HHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCE
YVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFALTLSARLLGDDAPVREQAEH
EEECCCHHHHCCCCEEECCCEECCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCE
IYYPW
ECCCC
>Mature Secondary Structure
MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVSYHDIPMVADSTLSERQ
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
QALFDAVVLPGGPQGSANLAANPAVIAFVARHDAAGKLICPICSAAARVLGAHGLLKGRR
HHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCE
YVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFALTLSARLLGDDAPVREQAEH
EEECCCHHHHCCCCEEECCCEECCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCE
IYYPW
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9592144 [H]