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The map label for this gene is ycgX [H]

Identifier: 16765197

GI number: 16765197

Start: 1953418

End: 1953813

Strand: Direct

Name: ycgX [H]

Synonym: STM1856

Alternate gene names: 16765197

Gene position: 1953418-1953813 (Clockwise)

Preceding gene: 16765193

Following gene: 39546328

Centisome position: 40.22

GC content: 34.85

Gene sequence:

>396_bases
ATGGAATTACAGCTTATGCTTAACCACTTTTTCGAGCGCGTCAGAAAGGATGCAAATTTCAACGCATTTCTAATCGATCT
GGAATATAATAATATCGCTTATTACATCTATTTTGTTGCTACCGGCAATGTGAAAATTATCACTCATGCAGGCCACTTCA
TTTCTATTAAAAGCAATAGAAAGCTGATTAAAGTCAATTCAACACCGAATACGCAATTAATAAAATTGATTTCAGCTAAA
CACTTTTCGGGGGAGCATTCCTATGAAAAATACTGTACTGATCTGGCAACGGCAGGCGTTTTTAAATGGATTGTTGAATT
AAACCAAAAAACTCGACAATACTGGTCGAAAGACAACCAATTATTATATATAGAAAATGTGGTCATGCCGCTTTAA

Upstream 100 bases:

>100_bases
GTGATTATTATTGCTTTTAGGTAACATATCTGTATGGCTGCTTTTAAGCAACAATACTCTAACACAACATATAACATTAT
AACTTACAATAGGTTAACAA

Downstream 100 bases:

>100_bases
CAAGCCAGGGTAATAATAGCGTCAGTCGTGACATCCGGCGTGTTACGACTGCGGGTTATCCAATTTAGAGACCATAATGA
GAGTCTGACTGCGAGAGTTA

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNVKIITHAGHFISIKSNRKLIKVNSTPNTQLIKLISAK
HFSGEHSYEKYCTDLATAGVFKWIVELNQKTRQYWSKDNQLLYIENVVMPL

Sequences:

>Translated_131_residues
MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNVKIITHAGHFISIKSNRKLIKVNSTPNTQLIKLISAK
HFSGEHSYEKYCTDLATAGVFKWIVELNQKTRQYWSKDNQLLYIENVVMPL
>Mature_131_residues
MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNVKIITHAGHFISIKSNRKLIKVNSTPNTQLIKLISAK
HFSGEHSYEKYCTDLATAGVFKWIVELNQKTRQYWSKDNQLLYIENVVMPL

Specific function: Unknown

COG id: COG5562

COG function: function code R; Phage envelope protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybcV and ydfO [H]

Homologues:

Organism=Escherichia coli, GI1787408, Length=127, Percent_Identity=40.9448818897638, Blast_Score=114, Evalue=2e-27,
Organism=Escherichia coli, GI87081758, Length=117, Percent_Identity=35.8974358974359, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI87081931, Length=127, Percent_Identity=31.496062992126, Blast_Score=83, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009833
- ProDom:   PD021249 [H]

Pfam domain/function: PF07166 DUF1398 [H]

EC number: NA

Molecular weight: Translated: 15395; Mature: 15395

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNVKIITHAGHFISIKSNR
CCHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEEEECCEEEEEECCEEEEEECCC
KLIKVNSTPNTQLIKLISAKHFSGEHSYEKYCTDLATAGVFKWIVELNQKTRQYWSKDNQ
EEEEECCCCCHHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLYIENVVMPL
EEEEEEEECCC
>Mature Secondary Structure
MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNVKIITHAGHFISIKSNR
CCHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEEEECCEEEEEECCEEEEEECCC
KLIKVNSTPNTQLIKLISAKHFSGEHSYEKYCTDLATAGVFKWIVELNQKTRQYWSKDNQ
EEEEECCCCCHHHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLYIENVVMPL
EEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]