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The map label for this gene is yobD

Identifier: 16765174

GI number: 16765174

Start: 1931276

End: 1931746

Strand: Direct

Name: yobD

Synonym: STM1833

Alternate gene names: 16765174

Gene position: 1931276-1931746 (Clockwise)

Preceding gene: 16765173

Following gene: 16765175

Centisome position: 39.76

GC content: 45.01

Gene sequence:

>471_bases
ATGACTATCACGGACCTGGTGCTGATTCTCTTTATTGCCGCATTATTGGCTTACGCTCTCTACGATCAGTTCATCATGCC
CCGTCGCAATGGCCCCACTCTGCTTTCTATAGCCCTGCTCCGCCGCGGTCGCGTAGACAGCGTTATCTTCGTTGGGCTGG
TCGCCATCCTTATTTATAACAACGTAACCAGCCACGGAGCGCAGATGACCACATGGTTATTAAGCGCGCTGGCGTTAATG
GGGTTTTATATATTCTGGATCCGCACGCCACGGATCATCTTTAAACAACGTGGCTTTTTCTTCGCCAATGTCTGGATAGA
ATATAACCGTATTAAAGAGATGAATTTATCGGAAGACGGCGTACTGGTGATGCAATTAGAACAACGACGCTTGCTTATCC
GTGTACGCAATATCGACGATCTGGAAAAAATATATAAACTTCTTATTGAAAATCAATATCTTAAGATATAG

Upstream 100 bases:

>100_bases
CATTGGTATCGCCGGCTACTCCGTAGGACTGCTGGGCCAGTAAGGCTGTTGTACACTACCGGGGCCAAACGGCCCCGTTT
TTTATTTCTCTGGAGGATAA

Downstream 100 bases:

>100_bases
CCTCAACTATGTTTTTCGAATTTTATTTCGAATCATAATATAGCTAAGGCTATATTTTCTATTGACCAATTGTTATTTAA
TTTAACGTTTTATTGATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALM
GFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI

Sequences:

>Translated_156_residues
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALM
GFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI
>Mature_155_residues
TITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALMG
FYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family

Homologues:

Organism=Escherichia coli, GI1788123, Length=152, Percent_Identity=88.1578947368421, Blast_Score=277, Evalue=3e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBD_SALTY (Q8ZP01)

Other databases:

- EMBL:   AE006468
- RefSeq:   NP_460789.1
- GeneID:   1253352
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1833
- NMPDR:   fig|99287.1.peg.1774
- HOGENOM:   HBG391110
- OMA:   RVRNIDN
- ProtClustDB:   PRK02913
- BioCyc:   STYP99287:STM1833-MONOMER
- HAMAP:   MF_01071
- InterPro:   IPR009328
- PIRSF:   PIRSF020687
- ProDom:   PD091196

Pfam domain/function: PF06173 DUF986

EC number: NA

Molecular weight: Translated: 18301; Mature: 18170

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf3abcd0)-; HASH(0xee1addc)-; HASH(0xf1b3ba4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECHHEECCCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI
EEEEEEHHHHHEEEECCCHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure 
TITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGRVDSVIFVGLVAILIYN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFANVWIEYNRIKEMNLSEDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEEEECHHEECCCCCCC
VLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI
EEEEEEHHHHHEEEECCCHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609