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The map label for this gene is sgcE [H]

Identifier: 16764961

GI number: 16764961

Start: 1705919

End: 1706551

Strand: Direct

Name: sgcE [H]

Synonym: STM1617

Alternate gene names: 16764961

Gene position: 1705919-1706551 (Clockwise)

Preceding gene: 16764960

Following gene: 16764962

Centisome position: 35.12

GC content: 56.56

Gene sequence:

>633_bases
ATGATCCTGCACCCTTCACTGGCCTCCGCCGATCCGCTGCGCTATGCCGAGGCGTTGACCGCTTTACACGATGCGCCTCT
CGGCTCGCTGCATCTGGATATCGAAGATACCAGTTTCATCAATAATATTACCTTCGGTATGAAAACCATTCAGGCGGTCG
CACAATACACTCGCCATCCGCTCTCATTTCACCTGATGGTCTCATCGCCGCAACGCTGGTTACCCTGGCTTGCAGCTATC
CGCCCCGGCTGGATTTTCATTCATGCCGAAAGCGTGCAAAACCCCCCGGAGATTCTGGCGGATATTCGCGCTATCGGGGC
GAAAGCAGGACTGGCGCTTAACCCGGCAACGCCGCTATTGCCTTATCGTTATCTGGCATTGCAACTGGATGCGCTGATGA
TCATGACCAGCGAACCCGACGGACGCGGACAGCAATTTATCGCCGCGATGTGTGAAAAAGTGAGCCAGGGCAGAGAGCAT
TTCCCTGCTGCGGAATGCTGGGCGGACGGCGGTATTACACTTCGCGCCGCACGGCTGCTTGCCGCCGCAGGCGCACAGCA
TCTGGTGATTGGCCGGGCGTTATTCACGACGGCGAACTATGATGTGACGTTGTCACAATTCACCGCGCTATAA

Upstream 100 bases:

>100_bases
AGTGGCTCGACTCGCCGGAAAGCGTCGCGATGTTGCAAGATGCGCCAAATGATGCCGCGCTTTTCGCGCAATTAACCGCA
TTGCGCTGATGGAGGTTCCG

Downstream 100 bases:

>100_bases
AGGAGTCATATGCTGATGAGCCAACAGCGCCCCGACCGTATCAAACAGATGTTGCATTACCTTTGGCAACACAGGCACCT
CTCAACACAGCAAGCTATTG

Product: epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAI
RPGWIFIHAESVQNPPEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREH
FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL

Sequences:

>Translated_210_residues
MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAI
RPGWIFIHAESVQNPPEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREH
FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL
>Mature_210_residues
MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAI
RPGWIFIHAESVQNPPEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREH
FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL

Specific function: Probable pentose-5-phosphate 3-epimerase [H]

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=199, Percent_Identity=32.1608040201005, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI219879828, Length=197, Percent_Identity=31.9796954314721, Blast_Score=107, Evalue=7e-24,
Organism=Homo sapiens, GI24307923, Length=155, Percent_Identity=30.3225806451613, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=65.7142857142857, Blast_Score=274, Evalue=3e-75,
Organism=Escherichia coli, GI1789788, Length=213, Percent_Identity=30.0469483568075, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790523, Length=206, Percent_Identity=31.0679611650485, Blast_Score=94, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=206, Percent_Identity=32.5242718446602, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322341, Length=215, Percent_Identity=29.7674418604651, Blast_Score=96, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24586301, Length=205, Percent_Identity=29.7560975609756, Blast_Score=101, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: 5.1.3.- [C]

Molecular weight: Translated: 22892; Mature: 22892

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHP
CEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
LSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPPEILADIRAIGAKAGLALNPATPLL
EEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCH
PYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREHFPAAECWADGGITLRAARLL
HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCHHHHHHHH
AAAGAQHLVIGRALFTTANYDVTLSQFTAL
HHCCCCHHHHHHHHHEECCCCEEHHHHHCC
>Mature Secondary Structure
MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHP
CEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
LSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPPEILADIRAIGAKAGLALNPATPLL
EEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCH
PYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREHFPAAECWADGGITLRAARLL
HHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCHHCCCHHHHHCCCCCHHHHHHHH
AAAGAQHLVIGRALFTTANYDVTLSQFTAL
HHCCCCHHHHHHHHHEECCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]