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The map label for this gene is ydeA [H]

Identifier: 16764867

GI number: 16764867

Start: 1598902

End: 1600092

Strand: Reverse

Name: ydeA [H]

Synonym: STM1522

Alternate gene names: 16764867

Gene position: 1600092-1598902 (Counterclockwise)

Preceding gene: 16764868

Following gene: 16764865

Centisome position: 32.94

GC content: 53.32

Gene sequence:

>1191_bases
ATGACAATCAATCCAGTTTCCCGCAAGGTCGCGTGGCTACGGGTAGTTACGCTTGCTATTGCCGCTTTTATTTTCAATAC
CACAGAATTTGTGCCAGTTGGTTTGCTATCAGACATTGCTGAAAGCTTTCATATGCAAACCGCGCAGGTCGGCATCATGC
TAACCATTTACGCCTGGGTAGTTGCCGTCATGTCGCTGCCTTTTATGCTTCTTACCAGTCAAATGGAGCGCCGTAAGCTA
CTCATTTATCTGTTTGTTTTGTTTATTGCCAGCCATGTGCTCTCCTTTCTGGCATGGAACTTTACCGTGCTGGTCATTAG
CCGTATTGGTATCGCTTTCGCCCACGCTATTTTCTGGTCGATAACCGCCTCGCTGGCGATCCGCCTGGCCCCTGCCGGGA
AACGCGCGCAGGCATTAAGTCTGATAGCGACCGGCACCGCGTTGGCCATGGTGCTTGGGCTGCCCATAGGTCGCGTTGTT
GGTCAGTATTTTGGCTGGCGCACCACCTTTTTTGCCATCGGCATGGGCGCATTAATTACGCTGCTATGTCTGATTAAGCT
TCTACCGAAATTGCCGAGCGAGCATTCCGGCTCACTAAAAAGTTTACCTTTGCTATTCCGACGCCCGGCGCTGATGAGCC
TCTATGTACTGACCGTCGTTGTGGTGACTGCGCATTACACAGCTTATAGCTATATTGAACCGTTCGTTCAGAATGTCGCC
GGGCTCAGTGCGAATTTTGCTACCGTCCTGTTACTGATCCTCGGCGGCGCCGGGATCATCGGCAGCCTCGTGTTTGGTAA
ACTGGGTAATCGCCATGCCTCGTCGCTCGTCAGTATCGCTATTGCCCTGCTGGTTGTCTGTCTGCTGCTGCTGCTGCCCG
CGGCGGAGAGCGAAGCGCATCTGGCCATACTGAGCATTTTCTGGGGCATCGCGATTATGGTGATAGGGCTCGGTATGCAG
GTGAAAGTACTGGCGCTGGCCCCGGACGCGACCGATGTCGCAATGGCGCTATTTTCAGGCATCTTTAATATTGGTATTGG
CGCTGGCGCGCTGGTAGGTAATCAGGTGAGTTTGCACTGGTCAATGTCGGCCATCGGCTATATTGGCGCCATACCCGCCT
GTGCCGCGCTGGTATGGGCTGTGCTCATATTCCGCAAATGGCCAGTGACGCTGGAAGAACAACCGCATTAA

Upstream 100 bases:

>100_bases
CGAAGTAAATGAGAAGCAGGTCACAAAATGATTGTCTTTTCGCCAGTAAACGTTTTAAGATCGCGGTCTCACCTTCTCGC
AACTAACCCGAAATATTTTT

Downstream 100 bases:

>100_bases
GACATTCGTCTGCCGGGAACAGGTTTCCGGCAGACGAAAATGCGCCTTAGTGGTACGTTTTAATAATTTCCAACACGCCG
TTGATAATAAATTGCACGCC

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFHMQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKL
LIYLFVLFIASHVLSFLAWNFTVLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVV
GQYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVA
GLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAAESEAHLAILSIFWGIAIMVIGLGMQ
VKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLEEQPH

Sequences:

>Translated_396_residues
MTINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFHMQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKL
LIYLFVLFIASHVLSFLAWNFTVLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVV
GQYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVA
GLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAAESEAHLAILSIFWGIAIMVIGLGMQ
VKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLEEQPH
>Mature_395_residues
TINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFHMQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKLL
IYLFVLFIASHVLSFLAWNFTVLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVVG
QYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVAG
LSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAAESEAHLAILSIFWGIAIMVIGLGMQV
KVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLEEQPH

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=396, Percent_Identity=87.6262626262626, Blast_Score=626, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=375, Percent_Identity=31.4666666666667, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI145693198, Length=344, Percent_Identity=27.3255813953488, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1786595, Length=278, Percent_Identity=23.3812949640288, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42482; Mature: 42351

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFHMQTAQVGIMLTIYAWV
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVMSLPFMLLTSQMERRKLLIYLFVLFIASHVLSFLAWNFTVLVISRIGIAFAHAIFWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVVGQYFGWRTTFFAIGMGALIT
HHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLTVVVVTAHYTAYSYIEPFVQNVA
HHHHHHHHHCCCCCCCCCCHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSLVSIAIALLVVCLLLLLPAAESEAH
CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LAILSIFWGIAIMVIGLGMQVKVLALAPDATDVAMALFSGIFNIGIGAGALVGNQVSLHW
HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEE
SMSAIGYIGAIPACAALVWAVLIFRKWPVTLEEQPH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA