Click here to switch to the map view.

The map label for this gene is ydeE [H]

Identifier: 16764861

GI number: 16764861

Start: 1594414

End: 1595601

Strand: Reverse

Name: ydeE [H]

Synonym: STM1516

Alternate gene names: 16764861

Gene position: 1595601-1594414 (Counterclockwise)

Preceding gene: 16764863

Following gene: 16764859

Centisome position: 32.85

GC content: 52.19

Gene sequence:

>1188_bases
ATGAATCCAGGATTGAGACGTTCGACGTTGGCTCTACTCGCCTCATCGCTGTTATTGACAATTGGACGCGGCGCCACGCT
CCCCTTTATGACCATCTATCTTAACCGTCAGTACGGTTTAGGCGTGGATCTGATTGGCTACGCGCTGACCAGCGCGTTAA
CGATCGGCGTCATCTTTAGTCTTGGCTTTGGGATTCTGGCGGACAAGTTTGATAAAAAGCGCTACATGTTACTCGCGATT
ATCGCCTTCGCCTGCGGATTTATCGCCATCCCAATGGTGCATAATGTCGTACTGGTTGTCCTGCTTTTTGCGCTTATTAA
CTGCGCCTATTCGGTTTTTTCTACCGTCCTGAAGGCCTGGTTCGCCGATAATCTCACCGCGACAACAAAAACACGGATTT
TTTCGCTCAACTATACCGTACTCAATATCGGCTGGACGGTTGGCCCGCCGCTCGGCACGCTGCTGGTGATGCAAAGCATC
AATTTACCCTTCTGGCTTGCCGCCATCTGCTCCGCATTCCCGCTGGTCTTTATTCAGGTATGGGTGACACGATCGGTTGC
CGCCAGCGAGGGGAAAAATGCCGCTATCTGGTCTCCCTCCGTTCTGCTGCGCGACAAAGCATTATTGTGGTTTACGCTTT
CGGCATTTCTGGCCTCCTTTGTGGGGGGCGCCTTTGCGTCCTGTATTTCACAGTACGTTATGGTCGTTGCCGATAGCGGC
TTCGCGGAAAAAGTGGTAGCCGTCGTCCTGCCGGTTAATGCGGTTATTGTGGTCAGTTTGCAATACGCCGTGGGCCGTCG
ACTTACCGCCGTCAATATTCGACCAATGATGACGACCGGCACCGTCTTTTTTATCGCCGGGCTCATCGGATTTATTTTTT
CAGGCGACAATCTGTTTTTTTGGGGGCTTTCAGCGGCAGTATTCACGATTGGCGAAATTATTTATGCCCCCGGCGAATAT
ATGTTAATTGACAACATTGCGCCTGCCGGGATGAAAGCCAGCTATTTTTCAGCGCAATCGCTGGGCTGGCTGGGTGCGGC
GGTAAACCCGCTGGCCAGCGGCGTCATCCTGACGACGCTTCCAGCCTGGTCGCTTTTCGTTGTCCTGATAATCGCCATTG
TGTTCGCCTGGGCACTGATGTTAAAAGGAATGCGGATTACCCCTACGCAACAGGCTATTACCTGTTAA

Upstream 100 bases:

>100_bases
TGGTATGTTAAGACTACGCTATAGCGTATAGACATCATGCTTTTGCGGGCACGGTAGATTAAAACGTCCCGATACGTAAC
CTCCATTTCAGGCAGGAAAA

Downstream 100 bases:

>100_bases
TTATCTGCAGCCAGTGATGTGCGCAGTTTCTGGCGCACCGGGTTAACCCTATATATTGCAGGCTAATTATCTGCTGTCAC
TGCGGTAATTCAGGAATATT

Product: MFS-type transporter YdeE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDLIGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAI
IAFACGFIAIPMVHNVVLVVLLFALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI
NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLASFVGGAFASCISQYVMVVADSG
FAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPMMTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEY
MLIDNIAPAGMKASYFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQAITC

Sequences:

>Translated_395_residues
MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDLIGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAI
IAFACGFIAIPMVHNVVLVVLLFALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI
NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLASFVGGAFASCISQYVMVVADSG
FAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPMMTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEY
MLIDNIAPAGMKASYFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQAITC
>Mature_395_residues
MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDLIGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAI
IAFACGFIAIPMVHNVVLVVLLFALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI
NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLASFVGGAFASCISQYVMVVADSG
FAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPMMTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEY
MLIDNIAPAGMKASYFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQAITC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787815, Length=395, Percent_Identity=76.7088607594937, Blast_Score=589, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42482; Mature: 42482

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDLIGYALTSALTIGVIFS
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LGFGILADKFDKKRYMLLAIIAFACGFIAIPMVHNVVLVVLLFALINCAYSVFSTVLKAW
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQV
HHCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLASFVGGAFASCISQYVMVVADSG
HHHHHHHHCCCCCCEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPMMTTGTVFFIAGLIGFIFSGDNLFF
HHHHHHHHHCCCCEEEEEEEHHHHCCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
WGLSAAVFTIGEIIYAPGEYMLIDNIAPAGMKASYFSAQSLGWLGAAVNPLASGVILTTL
EHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCHHHCHHHHHHHHHHHCCHHEECC
PAWSLFVVLIIAIVFAWALMLKGMRITPTQQAITC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
>Mature Secondary Structure
MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDLIGYALTSALTIGVIFS
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LGFGILADKFDKKRYMLLAIIAFACGFIAIPMVHNVVLVVLLFALINCAYSVFSTVLKAW
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQV
HHCCCCEEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLASFVGGAFASCISQYVMVVADSG
HHHHHHHHCCCCCCEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPMMTTGTVFFIAGLIGFIFSGDNLFF
HHHHHHHHHCCCCEEEEEEEHHHHCCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
WGLSAAVFTIGEIIYAPGEYMLIDNIAPAGMKASYFSAQSLGWLGAAVNPLASGVILTTL
EHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCHHHCHHHHHHHHHHHCCHHEECC
PAWSLFVVLIIAIVFAWALMLKGMRITPTQQAITC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]