Click here to switch to the map view.

The map label for this gene is opuCC [H]

Identifier: 16764838

GI number: 16764838

Start: 1570328

End: 1571230

Strand: Reverse

Name: opuCC [H]

Synonym: STM1493

Alternate gene names: 16764838

Gene position: 1571230-1570328 (Counterclockwise)

Preceding gene: 16764839

Following gene: 16764837

Centisome position: 32.35

GC content: 52.38

Gene sequence:

>903_bases
ATGAGATTCAAAAAACACCTGTTGGGATGGCTTGCCGCAACGCTGTTGTTCAGTAGCCAGACGCAGGCCGCGCCGCTGGT
TCTCGCCACCAAAAGCTTTACCGAACAGCATATTCTTTCCGCTATGACCGTTCAGTATTTGCAGAAGAAAGGCTTTCAGG
TTCAGCCGCAAACCAATATCGCCGCGGTGATTTCACGTAATGCGATGGTGAATAAACAAATTGATATTACCTGGGAATAC
ACCGGTACATCGCTGATTATTTTCAACCGTATCGATAAGCGCATGAGTCCACAGGAAACCTACGACACGGTAAAACGCCT
GGATGCGAAGCTGGGCCTGGTATGGCTCAAACCGGCTGACATGAACAATACTTACGCGTTCGCGATGCAGCGCAAACGCG
CCGAGTCGGAAAATATCACCACCATCTCGCAAATGGTGGCAAAAATCGAACAGGTCCGGCAGAACGATCCTGACCACAAC
TGGATGCTCGGCCTCGATCTGGAATTTGCCGGGCGCAGCGACGGAATGAAGCCCCTTCAGCAAGCCTACCAGATGCAGCT
CGATCGCCCGCAAATACGACAGATGGACCCAGGGCTGGTCTATAACGCCGTTCGGGATGGGCTGGTTGACGCCGGGCTGG
TCTATACCACCGACGGACGGGTGAAAGGGTTTGATCTGAAAGTGCTGGAAGATGATAAAGGCTTCTTTCCAAGTTACGCT
GTCACGCCCGTGGTGCGTAAAGAGGTGCTGGAAGCCAATCCTGGCCTTGATGACGCCTTAAACACCCTTTCCGGCCTGCT
CAATAACGATGTGATATCGACCCTAAACGCTCAGGTCGATATCGAGCATCGCACGCCGCAACAGGTAGCCCATCAATTTT
TGCAGGACAAAGGTCTGCTGTAA

Upstream 100 bases:

>100_bases
GCGTTATTCGCGCTGATTCTTGACACTCTGCTTGCCTGGTTTGGGCGACGCCTTAGCCCTCATACCGTCTGAACGCATAA
ATAACAATAAGGAGCGTTAA

Downstream 100 bases:

>100_bases
GGAGCGACTATGGATACGATACATTATATGCTGGATAACGCAGGCTATCTCGCCAGCCTTACCTTTCAGCATCTCTGGCT
GGTCGCGCTGGCCGTCGGTC

Product: ABC transporter periplasmic component

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTVQYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEY
TGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN
WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYA
VTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQDKGLL

Sequences:

>Translated_300_residues
MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTVQYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEY
TGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN
WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYA
VTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQDKGLL
>Mature_300_residues
MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTVQYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEY
TGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN
WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYA
VTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQDKGLL

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=285, Percent_Identity=27.719298245614, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 33884; Mature: 33884

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTVQYLQKKGFQVQPQTNI
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCH
AAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKPAD
HHHHCCCCEECCEEEEEEEECCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCEEEECCCC
MNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKPLQ
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHH
QAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYA
HHHHHHCCCCHHHCCCCCHHHHHHHCCHHCCCEEEECCCCEECEEEEEEECCCCCCCCHH
VTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQDKGLL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTVQYLQKKGFQVQPQTNI
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCH
AAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKPAD
HHHHCCCCEECCEEEEEEEECCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCEEEECCCC
MNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKPLQ
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHH
QAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFFPSYA
HHHHHHCCCCHHHCCCCCHHHHHHHCCHHCCCEEEECCCCEECEEEEEEECCCCCCCCHH
VTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQDKGLL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]