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The map label for this gene is ompN [H]

Identifier: 16764819

GI number: 16764819

Start: 1549676

End: 1550809

Strand: Reverse

Name: ompN [H]

Synonym: STM1473

Alternate gene names: 16764819

Gene position: 1550809-1549676 (Counterclockwise)

Preceding gene: 16764820

Following gene: 16764818

Centisome position: 31.93

GC content: 47.62

Gene sequence:

>1134_bases
ATGAAAAGAAAAGTATTGGCACTTGTCATCCCGGCTCTGCTGGCTGCTGGCGCAGCACACGCCGCTGAAATTTATAACAA
AGACGGCAACAAACTGGACCTTTACGGGAAAGTAGACGGCCTGCACTATTTCTCTGATGACTCTTCTAAAGATGGCGATC
AGACCTATATGCGTGTCGGCTTTAAAGGCGAAACACAGATTAACGACCAACTGACCGGTTACGGCCAGTGGGAATATAAC
GTTCAGGCTAACACTACCGAAGGCGAAGGTGCTAATTCCTGGACTCGTCTGGCATTCGCCGGCCTGAAATTCGGCGACTA
CGGCTCATTCGACTATGGTCGTAACTACGGCGTCCTGTACGACGTAGAAGGCTGGACCGATATGCTGCCTGAGTTCGGCG
GCGACTCCTACACTTACGCTGACAACTTCATGACCGGTCGTGCTAACGGCGTGGCCACCTACCGTAACACTGATTTCTTC
GGTCTGGTAGACGGTCTGAACTTCGCGTTGCAATATCAGGGTGCCAATGAAAACCAGGTTTCTCATGAGCAGGAAGGCAC
TAATAACGGCGGCGATCGTAACGTGAAGAACGCTAACGGTGACGGCTTCGGTATCTCATCAACTTATGATCTGGGTATGG
GCGTAAGTTTCGGCGCGGCATATACCACTTCCGATCGTACTAATGGTCAGGTTAATTACTCTACCGCTGGCGGTGATAAA
GCGGATGCATGGACTGTTGGCGCTAAATATGATGCTAATAATATCTATCTGGCCACAATGTATTCAGAAACCCGTAATAT
GACGCCTTACGGCAATGACGATTGTCGCTCATGCGTAGCAAACAAAACGCAAAACTTCGAAGTTACAGCCCAATATCAAT
TTGATTTCGGTCTGCGCCCGGCGGTTTCTTTCCTGATGTCTAAAGGTAAAGATTTGACCTATAACAACGTTAATGGCGAT
GATAAAGACCTGGTTAAATATGCTGATGTAGGTGCTACCTACTATTTCAACAAAAACTTCTCCACCTATGTTGATTATAA
AATCAACCTGCTGGATGATGACGACCAGTTCTATAAAGATGCCGGTATCAGCACTGATGATATCGTCGCGCTGGGTATGG
TTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TTTGCTGAAATAATATTATTCAGATTAGGATGCCTTTGATTCAACGAATCTGTAGAAGTTCAATCTTTTGCAAATAAGTT
AAGTTTTTAAGGATAAAAAA

Downstream 100 bases:

>100_bases
TTATTCATTAATTCTTCTCAAGCCCGCCGTTTCGGCGGGCTTTTCTTTTTTCATCACCACCGTTCTAAAAACAGAACGCA
CAGTTCCCTGGGCACAGATT

Product: outer membrane protein N precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFF
GLVDGLNFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQVNYSTAGGDK
ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGD
DKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF

Sequences:

>Translated_377_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFF
GLVDGLNFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQVNYSTAGGDK
ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGD
DKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF
>Mature_377_residues
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYN
VQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFF
GLVDGLNFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQVNYSTAGGDK
ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGD
DKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF

Specific function: Non-Specific Porin. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=382, Percent_Identity=81.151832460733, Blast_Score=574, Evalue=1e-165,
Organism=Escherichia coli, GI1788544, Length=380, Percent_Identity=65.7894736842105, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1786436, Length=378, Percent_Identity=61.1111111111111, Blast_Score=442, Evalue=1e-125,
Organism=Escherichia coli, GI1787160, Length=387, Percent_Identity=57.3643410852713, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41608; Mature: 41608

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFFGLVDGLNFALQYQGANENQV
ECCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
SHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQVNYSTAGGDK
CCHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCEEEEEECCCCC
ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEVTAQYQFDFGLRP
CCEEEECCEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHH
AVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKD
HHHHHHHCCCCEEECCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCHHHHHH
AGISTDDIVALGMVYQF
CCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEE
FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY
CCCCCEECCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFFGLVDGLNFALQYQGANENQV
ECCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCC
SHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFGAAYTTSDRTNGQVNYSTAGGDK
CCHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCEEEEEECCCCC
ADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCRSCVANKTQNFEVTAQYQFDFGLRP
CCEEEECCEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHH
AVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKD
HHHHHHHCCCCEEECCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCHHHHHH
AGISTDDIVALGMVYQF
CCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]