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The map label for this gene is rnfC [H]

Identifier: 16764805

GI number: 16764805

Start: 1531570

End: 1533777

Strand: Reverse

Name: rnfC [H]

Synonym: STM1457

Alternate gene names: 16764805

Gene position: 1533777-1531570 (Counterclockwise)

Preceding gene: 16764806

Following gene: 16764804

Centisome position: 31.58

GC content: 59.87

Gene sequence:

>2208_bases
ATGCTTAAACTATTTTCCGCTTTCAGAAAAGATAAAATCTGGGATTTCGACGGTGGTATTCATCCGCCCGAAATGAAGAC
CCAGTCAAACGGCACGCCGCTGCGCCAGGTGCCTTTAGCGCCGCGCTTTGTTATCCCTTTAAAACAGCACATTGGCGCTG
AGGGCGAGCTGTGCGTTAGCGTCGGCGATCGCGTGCTACGCGGCCAGGCGCTTACCCGTGGACGTGGGAGAATGCTGCCG
GTACACGCGCCCACCTCCGGGACGGTTATCGCTATTGCCCCCCACTCGACGGCGCATCCTTCGGCGCTGGCGGAGTTAAG
CGTAATCATTGATGCCGACGGCGAGGACCGCTGGATTGAACGCGAGGGCTGGTCTGATTACCGCGCCCACAGCCGTGAAG
CGCTCATTGAACGCATTCATCAGTATGGCGTTGCCGGGCTTGGCGGCGCGGGGTTTCCCACCGGCGTTAAATTGCAGGGC
GGCGGCGATAAAATCACCACGCTTATTATCAATGCCGCAGAGTGCGAACCTTACATTACGGCGGACGATCGTTTGATGCA
GGACTGCGCCGCGCAGATTGTGGAAGGTATTCGCATCCTGGCGCATATTCTGCAACCGCGTGAGGTATTAATCGGCATTG
AAGATAACAAACCGCAGGCTATTTCCATGCTGCGCGCCGTACTGGCTGACGCCCACGATATTTCGTTACGTGTGATCCCA
ACCAAATACCCTTCCGGCGGCGCAAAACAGCTCACCCGAATACTGACGGGAAAACAGGTTCCCCACGGCGGGCGCTCCTC
TGATATTGGCGTGCTGATGCAAAACGTCGGTACGGCGTATGCCGTTAAACGCGCCGTGATTGACGGCGAACCGATCACAG
AACGCGTCGTCACCTTAACGGGTGAAGCGGTAAGCCGCCCGGGTAACGTCTGGGCGCGGCTCGGCACTCCCGTTCGTCAT
TTGCTTAACGATGCCGGGTTCTGCCCTTCTGCTGACCAGATGGTCATCATGGGCGGCCCGTTGATGGGATTCACCCTTCC
CTGGCTTGACGTACCGGTCGTAAAAATCACCAACTGCCTGCTGGCGCCATCCGTGACTGAAATGGGAGCGCCTCAGGAAG
AGAAAAGCTGTATTCGTTGCAGCGCTTGCGCTGACGCTTGCCCTGCCGACCTTTTACCGCAGCAGCTTTATTGGTTCAGC
AAAGGGCAGCAGCATGACAAGGCTACCGCTCACCATATTGCTGATTGTATAGAATGCGGCGCCTGCGCCTGGGTCTGCCC
GAGTAATATTCCGCTCGTCCAATATTTCCGTCAGGAAAAAGCGGAGATTAATGCGATCAGGCTTGAAGAAAAACGCGCCG
CCGAAGCCAAAGCGCGTTTTGAGGCTCGTCAGGCAAGACTGGAGCGCGAAAAAGCCGCCCGCCTTGCACGTCACAAGAGC
GCAGCGGTACAACCAGCGGCAAAAGATCAGGATGCCATTGCCGCTGCGCTGGCGCGGGTAAAAGAGAAACAGGCGCAGGC
CACGCAACCGGTGGTTATTCAGGCGGGTAGTCAGCCAGACAATAGCGCCGTCATCGCGGCCCGTGAAGCGCGTAAAGCGC
AAGCGCGCGCTAAACAAGCCGCTCATCCGATGGCTGACAGCGCGATACCCGGCGACGACCCGAGTAAAGCTGCAGTGGAG
GCAGCCATCGCCCGCGCCAAAGCCCGTAAGCAGGAGCAGCAGGCCGGAAGCGAACCTGCCGAACCGGTCGATCCGCGTAA
AGCCGCGGTGGAGGCAGCCATCGCCCGCGCCAAAGCCCGTAAGCAGGAGCAGCAGGCCGGAAGCGAACCGGTCGAAGCGG
TCGATCCGCGTAAAGCCGCGGTGGAAGCGGCTATCGCCCGCGCCAAAGCCCGTAAGCAGGAGCAGCAGACCGGAAGCGAA
CCTGCCGAAGCGGTCGATCCGCGCAAAGCCGCGGTGGAAGCGGCTATCGCCCGCGCCAAAGCCCGCAAGCAGGAGCAGCA
GACCGGAAGCGAACCTGCCGAACCGATCGATCCGCGCAAAGCCGCAGTGGAAGCGGCCATCGCTCGCGCCAAAGCCCGTA
AGCAGGAGCAGCAGGCCGGAAGCGAACCTGCCGAACCGGCCGACCCGCGTAAAGCCGCGGTTGCTGCGGCTATCGCCCGC
GTTCAGGCAAAAAAAGCAGCACAGCAGCAGGTTGTTAACGAGGATTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCGAATTACGTCCGGTGAATGAGACGCCCGACAGTTGGAAATGGGATTTGAACACCATTCCCGTTCG
CATCATTCCCGTGGAACAAC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATCGCAAGCTCGCCTTATACCCATAACCAGCGCCAGACATCGCGAATCATGTTGCTGGTATTAATCGC
CGCTCTGCCGGGGATTGCCG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSQPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPSKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEAVDPRKAAVEAAIARAKARKQEQQTGSE
PAEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEPIDPRKAAVEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIAR
VQAKKAAQQQVVNED

Sequences:

>Translated_735_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSQPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPSKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEAVDPRKAAVEAAIARAKARKQEQQTGSE
PAEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEPIDPRKAAVEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIAR
VQAKKAAQQQVVNED
>Mature_735_residues
MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP
VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG
GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
TKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSQPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPSKAAVE
AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEAVDPRKAAVEAAIARAKARKQEQQTGSE
PAEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEPIDPRKAAVEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIAR
VQAKKAAQQQVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=740, Percent_Identity=87.1621621621622, Blast_Score=1092, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 78699; Mature: 78699

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH
VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE
HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC
REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGGDKITTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC
GEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG
HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSQPDNSAVIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHH
AHPMADSAIPGDDPSKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KQEQQAGSEPVEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEAVDPRKAAVEAAIARAK
HHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
ARKQEQQTGSEPAEPIDPRKAAVEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIAR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VQAKKAAQQQVVNED
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH
VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE
HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC
REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGGDKITTLIINAAECEPYIT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC
GEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG
HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS
CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSQPDNSAVIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHH
AHPMADSAIPGDDPSKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
KQEQQAGSEPVEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEAVDPRKAAVEAAIARAK
HHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHH
ARKQEQQTGSEPAEPIDPRKAAVEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIAR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
VQAKKAAQQQVVNED
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA