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The map label for this gene is ydhO [H]

Identifier: 16764780

GI number: 16764780

Start: 1510121

End: 1510975

Strand: Reverse

Name: ydhO [H]

Synonym: STM1432

Alternate gene names: 16764780

Gene position: 1510975-1510121 (Counterclockwise)

Preceding gene: 16764782

Following gene: 16764779

Centisome position: 31.11

GC content: 51.23

Gene sequence:

>855_bases
ATGAATCGCCTGCCTTTAACAGAGGATTGCTCAGTGGCGCGGATAAACAAAATCTCGATCACGCTCTGTGCTTTACTTTT
TACTACTCTCCCCTTTACGCCAATGGCCCATGCTTCCAGGCAAGCCAAAGCGACGCCTGCTGTTTCTCATGTCACGAAAA
CGGCAGATAAAAAGAAAAGCACAACGAAAAAGATCAGTAAAACCAGCAAAAAAAACGTAAAAAAAACCTCAAAAACCAGC
CGTTCTTCTTCCGCTTCTACGCCAAAACGTACCACCGCCTCCACGAAATCTCGTCATACGACGCATCGTCGTAACAGAAC
CGCGCCCACGTCAATCGCCGCCCTCGACGTAACGGAAAAATGCACGACGCGTAAAGGCCGTAAGCCGCACTGCGTGAAGG
GGAAAGGAACATTGCCGGTCTCTATTGCCGATGCGCATCGTGCAAAAGTACAAAAAGCGACGAAAACCGCGATGTCCAAA
CTCATGAATCAGATTGGTAAACCGTATCACTGGGGAGGCGCGTCGCCGCGCACCGGTTTTGATTGCAGCGGTCTGGTTTA
TTATGCCTATAAAGATTTAGTGAAGATCCGTATCCCCCGAACGGCGAATGAGATGTATCACCTGCGTGACGCGGCGCCCA
TTGAGCGTAGCGAGTTGAAAAACGGCGATCTGGTGTTCTTCCGTACGCAGGGGCGCGGCACCGCCGATCACGTTGGCGTC
TATGTCGGCAACGGTAAGTTTATCCAGTCTCCGCGCAGCGGTCAGGAAATTAAGATCACCTCACTGAACGAAGAATACTG
GCAACGTCATTATGTCGGCGCCCGCCGGGTGATGACGCCTAAAACAATTCGCTAA

Upstream 100 bases:

>100_bases
TTACATCTGTTAACGAAACACAGCTTCAGAAACCAAAAGCAATTACCAATCTGTGCTTTTGTAGATTAGAATTATCAGGT
TTTGTAAATCATACGCAGGC

Downstream 100 bases:

>100_bases
TATTTTATCCTGTCGTTTAACGACAGGATAACTTCTTCTTTTGCGCCACCGCTCAATTTGCTACCCTATCCTTACGCGCA
CCAGGGGTATTGTGCGTGCG

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Sequences:

>Translated_284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
>Mature_284_residues
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTS
RSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK
LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=279, Percent_Identity=70.2508960573477, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1786421, Length=267, Percent_Identity=33.7078651685393, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1788501, Length=125, Percent_Identity=37.6, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788001, Length=126, Percent_Identity=34.9206349206349, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 31541; Mature: 31541

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKS
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
TTKKISKTSKKNVKKTSKTSRSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCEEEEEECHHH
CTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGF
HHHCCCCCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
DCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
CCCCCHHHEECCEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEE
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
EECCCEEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure
MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKS
CCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
TTKKISKTSKKNVKKTSKTSRSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCEEEEEECHHH
CTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGF
HHHCCCCCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
DCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGV
CCCCCHHHEECCEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEE
YVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
EECCCEEEECCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]