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The map label for this gene is orf242 [H]

Identifier: 16764740

GI number: 16764740

Start: 1475260

End: 1475988

Strand: Reverse

Name: orf242 [H]

Synonym: STM1390

Alternate gene names: 16764740

Gene position: 1475988-1475260 (Counterclockwise)

Preceding gene: 16764741

Following gene: 16764739

Centisome position: 30.39

GC content: 53.91

Gene sequence:

>729_bases
ATGTCGTATTCTATCGGCGAATTTGCCAGACTATGCGGTATCAATGCCGCCACGCTAAGGGCATGGCAGCGACGCTATGG
TTTATTGAAACCGCAGCGTACTGATGGCGGACATCGCTTATACAGCGATGACGATATTCGACAAGCGCTTAGCATTCTCG
ACTGGGTGAGAAAAGGCGTACCGATAAGCCAGGTCAAACCCTTACTGTCGCGTCCGGTTATTCGCCTGGGCGATAACTGG
ATAACGATCCAGGAGACGATGCTTCAACATCTCCACGAAGGGCGAATTGACGCGCTGCGGCAGTTGATTTATGACTGTGG
CCGGGAATATCCCCGCGCAGAACTGGTGACCCATTTATTGCGTCCGTTGCGCAGCAAAGTGTCCGCGCATCTTCCCGCCG
TGATGACGCTGCGCGAAATACTGGATGGCATCATTATTGCCTACACCTCTTTTTGCCTTGAAGGCGACAGAAAAGCGCCT
GGCAACAATGCCTTTATTAGCGGATGGAATCTCTCGGATCACTGTGAAATCTGGCTGGAAACGTTGACTCGTACCGGACA
AGAGCTGCGGCTCAATGTGCTTCCCTCGCCCCCAGTTGTGCTGGCGCCCGAGCTGTTCGCCCAGAGAAAATGGTTCCTGG
TGACCACCGGAAAGCTCACTGCCGGGCAGAAAAAACAGCTTGCCCAGTGGCGCAACGTGGTCGCTTCGCTGGAGGTTATC
ACACTATAG

Upstream 100 bases:

>100_bases
AAATCCATACGGATGCCCTGGTATGCCGCACCATTTATCACTACCTTAGTCTTCATTTGATCATGATATAGTAGAATCCC
CTTATTTAACGGGCTTTACC

Downstream 100 bases:

>100_bases
GCGCTGAAATAGATTTCTTCCCCTCATTCTATCTTATTGATATTTAATTACGTCAAAAAAAATCTCCGCGAAAACTTAGA
CAAAAAAACAAAGTTGTGTA

Product: regulatory protein

Products: NA

Alternate protein names: MerR-like regulator A [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNW
ITIQETMLQHLHEGRIDALRQLIYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAP
GNNAFISGWNLSDHCEIWLETLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVI
TL

Sequences:

>Translated_242_residues
MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNW
ITIQETMLQHLHEGRIDALRQLIYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAP
GNNAFISGWNLSDHCEIWLETLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVI
TL
>Mature_241_residues
SYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNWI
TIQETMLQHLHEGRIDALRQLIYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAPG
NNAFISGWNLSDHCEIWLETLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVIT
L

Specific function: Transcriptional activator of the csg genes required for production of the curli (AgF) [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788448, Length=229, Percent_Identity=44.1048034934498, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1787409, Length=228, Percent_Identity=37.280701754386, Blast_Score=160, Evalue=7e-41,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 27513; Mature: 27382

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQALSILDWVRKGV
CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALRQLIYDCGREYPRAELVTHLL
CHHHHHHHHHCCHHHHCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAPGNNAFISGWNLSDHCEIWLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHH
TLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVI
HHHCCCHHEEEEECCCCCCEECHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
TL
CC
>Mature Secondary Structure 
SYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQALSILDWVRKGV
CCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALRQLIYDCGREYPRAELVTHLL
CHHHHHHHHHCCHHHHCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
RPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAPGNNAFISGWNLSDHCEIWLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHH
TLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVI
HHHCCCHHEEEEECCCCCCEECHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
TL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11489123; 9278503 [H]