Click here to switch to the map view.

The map label for this gene is ydiU [H]

Identifier: 16764696

GI number: 16764696

Start: 1423573

End: 1425015

Strand: Direct

Name: ydiU [H]

Synonym: STM1345

Alternate gene names: 16764696

Gene position: 1423573-1425015 (Clockwise)

Preceding gene: 16764695

Following gene: 16764700

Centisome position: 29.31

GC content: 54.33

Gene sequence:

>1443_bases
ATGACCCTGTCTTTTACTGCCCGTTGGCGCGATGAATTGCCAGCAACGTATACCGCGCTTTTACCCACACCGTTAAAAAA
TGCGCGACTGATTTGGTATAACGACGAACTGGCGCAGCAGTTAGCCATTCCCGCTTCGTTATTTGATGCTACCAATGGCG
CTGGCGTTTGGGGCGGCGAAACCTTATTACCCGGTATGTCGCCTGTCGCGCAGGTATATAGCGGGCATCAGTTCGGCGTC
TGGGCGGGACAACTCGGCGACGGACGCGGTATTTTGCTGGGCGAACAGCTCCTGGCGGATGGCTCGACGCTCGACTGGCA
TCTGAAAGGCGCCGGATTAACACCCTATTCGCGAATGGGGGATGGACGCGCCGTCCTGCGTTCAACCATACGAGAAAGCC
TTGCCAGCGAAGCCATGCATTATCTGGGTATTCCCACTACGCGCGCGTTATCTATCGTAACCAGCGATACGCCGGTTCAG
CGAGAGACGCAGGAAACGGGCGCGATGTTAATGCGTCTGGCGCAAAGTCATATGCGTTTTGGTCATTTCGAACATTTCTA
CTACCGCCGTGAGCCGGAAAAAGTTCAGCAACTGGCTGATTTCGCTATTCGTCATTACTGGCCGCAATGGCAGGATGTCC
CGGAAAAATATGCTTTGTGGTTTGAAGAGGTGGCGGCGCGTACCGGAAGACTCATCGCCGAGTGGCAAACCGTCGGTTTT
GCGCACGGCGTTATGAATACGGATAACATGTCGATTCTGGGGCTGACCATCGACTATGGTCCCTTTGGTTTTCTCGATGA
CTACGATCCCGGCTTCATTGGTAACCATTCCGATCATCAGGGACGTTACCGCTTCGATAATCAACCGTCGGTGGCGCTGT
GGAATTTACAACGTCTGGCGCAGACGTTAACCCCTTTTATTGAGATCGACGCGTTAAACAGAGCGCTGGATCGTTACCAG
GACGCGTTGTTAACGCACTATGGGCAGCGAATGCGCCAGAAGCTGGGCTTCTTTACCGAGCAAAAAGACGATAACGTTTT
ACTGAATGAATTGTTTAGTCTGATGGCGCGCGAAGGGAGTGATTATACCCGTACATTTCGGATGTTAAGCCATACGGAGC
AACAGAGCGCCTCCTCGCCGTTGCGGGATACGTTTATCGATCGCGCGGCGTTTGATGCCTGGTTCGATCGCTACCGGGCG
CGATTGCGCACAGAGGCGGTGGATGACGCGCTGCGCCAGCAGCAGATGCAACGCGTGAATCCTGCGATTGTGTTGCGCAA
CTGGCTGGCGCAACGCGCGATAGATGCGGCTGAACAGGGAGACATGGCGGAACTGCATCGGTTGCATGAAGTTTTACGTC
AACCTTTTACCGATCGAGATGATGACTATGCCCGCCGACCACCGGAGTGGGGAAAGCGGCTGGAGGTCAGTTGTTCAAGT
TAG

Upstream 100 bases:

>100_bases
GTGCCGGTAAGCCAGCTCATTAAACTCGTTCAGCGATAACCTTTCTGTTTGCCGGTGTTTAACCGGTGATTAACCGTCTA
CACTGAAGACAGGAGGCCCT

Downstream 100 bases:

>100_bases
CCTGATGCCAGCAGCATCGTCTGCTGGCGGAGCGCTATTTGGTTAACAGTAGCTTCCCGGCCTGAGTTTTGCGCAACAGA
TACTCCTGACCGTTGTGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGV
WAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQ
RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYALWFEEVAARTGRLIAEWQTVGF
AHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQ
DALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRA
RLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYARRPPEWGKRLEVSCSS

Sequences:

>Translated_480_residues
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGV
WAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQ
RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYALWFEEVAARTGRLIAEWQTVGF
AHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQ
DALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRA
RLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYARRPPEWGKRLEVSCSS
>Mature_479_residues
TLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVW
AGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQR
ETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYALWFEEVAARTGRLIAEWQTVGFA
HGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQD
ALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRAR
LRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYARRPPEWGKRLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=383, Percent_Identity=44.1253263707572, Blast_Score=300, Evalue=2e-81,
Organism=Escherichia coli, GI1787999, Length=480, Percent_Identity=82.0833333333333, Blast_Score=822, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6325034, Length=360, Percent_Identity=35.8333333333333, Blast_Score=216, Evalue=5e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54941; Mature: 54810

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGE
CCEEECCHHHHCCCCCEEHHCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCCC
TLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMG
CCCCCCHHHHHHHCCCCCCEEECCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCHHHCC
DGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRETQETGAMLMRLAQSHMRF
CHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYALWFEEVAARTGRLIAEWQTVGF
CCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
AHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLA
HHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
QTLTPFIEIDALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
DYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRARLRTEAVDDALRQQQMQRVN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYARRPPEWGKRLEVSCSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIPASLFDATNGAGVWGGE
CEEECCHHHHCCCCCEEHHCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCCC
TLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGSTLDWHLKGAGLTPYSRMG
CCCCCCHHHHHHHCCCCCCEEECCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCHHHCC
DGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQRETQETGAMLMRLAQSHMRF
CHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYALWFEEVAARTGRLIAEWQTVGF
CCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
AHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNHSDHQGRYRFDNQPSVALWNLQRLA
HHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
QTLTPFIEIDALNRALDRYQDALLTHYGQRMRQKLGFFTEQKDDNVLLNELFSLMAREGS
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
DYTRTFRMLSHTEQQSASSPLRDTFIDRAAFDAWFDRYRARLRTEAVDDALRQQQMQRVN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIVLRNWLAQRAIDAAEQGDMAELHRLHEVLRQPFTDRDDDYARRPPEWGKRLEVSCSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA