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The map label for this gene is yodB [H]

Identifier: 16764605

GI number: 16764605

Start: 1337448

End: 1337978

Strand: Reverse

Name: yodB [H]

Synonym: STM1253

Alternate gene names: 16764605

Gene position: 1337978-1337448 (Counterclockwise)

Preceding gene: 16764606

Following gene: 16764601

Centisome position: 27.54

GC content: 47.27

Gene sequence:

>531_bases
ATGGCACATTTCTCAAGACTGCAAATAACGCTTCACTGGTTAACACTGCTCCTGACAGGCATCGCATATGCTGCTATTGA
GTTACGGGGGTGGGCGCCAAAAGGCTCCAGCGTTTACCTGTTTATGAAAGACACGCACTATGATATGGGCGTTCTGGTCT
GGGCGCTGATGTTTTTACGGTTATATCTTAAACACAAATACCCGGATCCGGTCATTACGCCTCCCCCTCCTCACTGGCAG
CACGTAGCCGCTAAATTAATGCATATCGCGCTTTATCTCACTTTTCTCGCCTTACCGCTGCTGGGCGTCGCGATGATGGC
GTCAGGCGGGAAAAGCTGGAGCTTTTTTGGTTTTACTGTACCGGTATTTTTGACGCCAGATAGCACCCTAAAATCGGATA
TAAAGCGTATTCATGAAATGCTGGCCAATATCGGCTATTTCCTGATTGCCATGCATGCAGCAGCGGCGTTGTTTCACCAT
TACATACAAAAAGACGATACATTTTCAAGGATGTTACCCGGTAAATCATGA

Upstream 100 bases:

>100_bases
CGCTATCTCTGTCTGTTCCTTGCGACTCAGCCCCCGCTTTAAGGTTCTGTTAAGATTTTACGCATACTCTACAAGCAGTT
GTTAATAAAGGATAATAATA

Downstream 100 bases:

>100_bases
CTATTTCGGCCATCCCGGCGTGAGAGAGCACGCCGGGCAAGGCATTATTATTCCAGCGCTATCGGTTTCGACTGATAGCG
CCTTATACCGTTTGTAATCG

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQ
HVAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHH
YIQKDDTFSRMLPGKS

Sequences:

>Translated_176_residues
MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQ
HVAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHH
YIQKDDTFSRMLPGKS
>Mature_175_residues
AHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQH
VAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHHY
IQKDDTFSRMLPGKS

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=175, Percent_Identity=66.2857142857143, Blast_Score=246, Evalue=6e-67,
Organism=Escherichia coli, GI87081903, Length=172, Percent_Identity=44.1860465116279, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19986; Mature: 19855

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
LYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTV
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
PVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHHYIQKDDTFSRMLPGKS
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
>Mature Secondary Structure 
AHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
LYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTV
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
PVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHHYIQKDDTFSRMLPGKS
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]